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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3648_PI390587928Hv_44K_v2CGTTGCACCATGTACACTTCCAGTATATGGATTATACTTATATAATCATTTCACCCATGT626GeneList: grey60
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.2542.9381.2450.6570.3670.854
Raw 156.287320.249126.436109.11319.87752.218



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_81870.14892e-24413 - 47210060 / 60plus ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827
MLOCAK250027.16973e-22642 - 69710056 / 56plus ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018
MLOCMLOC_19141.26273e-21558 - 6179758 / 60plus ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018
JLOC1JLOC1_54457.14415e-22387 - 44110055 / 55plus
JLOC1JLOC1_13276.19772e-21846 - 9059758 / 60plus
Harvest35U35_2877153e-25627 - 68610060 / 60plus
Harvest35U35_374425936e-22103 - 1629758 / 60minus



Contig Sequence (715 bp)

>U35_287 715 Hv_44K_v2
AGCCATCTCATCATCTCCAGTTAAGCTCGGCTGCGCTGCTATTCCAAACTCGTTAGGGAT
GGCTCGCTCTGCAGCTACTCAGCTCGTGCTGGTCGCCATGGTAACCGCTATGCTCCTCAT
AGCCGCCGACGCGGCCATCTCCTGCGGTCAGGTGAGCTCTGCCTTGAGCCCCTGCATCTC
CTATGCCCGCGGCAAAGGCGCCAAACCGCCTGCGGCCTGCTGCAGCGGCGTCAGGAGCCT
GGCCGGCGCAGCGCGGAGCACCGCTGACAAGCAAGCGGCGTGCCGGTGCATCAAGAGAGC
TGCGGGTGCGCTAAACGCTGGCAAGGCCGCCGGCATCCCCAACAAGTGCGGCGTCAGGGT
CCCCTACGCAATCAGCGCTTCCGTCGACTGCTCTAAGATTCGCTGATCAACCACTGCCCA
CCATGGGTGCCCGCCTATAGCGCCCTCCGTCGCCGCTGAGTATGCTGAGTTCACGAATAC
ATATGAATAAACGCTCTGATCTGATCTCCATGTGAGGGAGAAAGGAGTCTGCATGCTGAG
CCAACTCTGTATGGCTGGCCAATATCGTACTCCTATGGTTGTTTTTTACTTTCTCTCCCT
TTGAGGAGACACGAGACTTTATTGTACGTTGCACCATGTACACTTCCAGTATATGGATTA
TACTTATATAATCATTTCACCCATGTATTTTATTCCAAGAAAAAAAAAAAAAAAG



Homology of Contig U35_287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None