- Probe CUST_15905_PI390587928
- Source Contig U35_95
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15905_PI390587928 | Hv_44K_v2 | CACGAGGCTTTATTGTACGTTGCACCATGTACACTTCCATTATATGGATTATACTTATAT | 623 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.107 | 2.656 | 1.129 | 0.733 | 0.376 | 0.782 |
| Raw | 454.452 | 868.508 | 351.650 | 383.528 | 62.627 | 147.309 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19141.2 | 627 | 2e-24 | 541 - 600 | 100 | 60 / 60 | plus | ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018 |
| MLOC | MLOC_19141.1 | 1779 | 2e-24 | 1713 - 1772 | 100 | 60 / 60 | plus | ABC00717 ABC00824 ABC00845 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018 |
| MLOC | AK250027.1 | 697 | 3e-21 | 625 - 684 | 97 | 58 / 60 | plus | ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827 ABC53018 |
| MLOC | MLOC_81870.1 | 489 | 3e-21 | 396 - 455 | 97 | 58 / 60 | plus | ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC50827 |
| JLOC1 | JLOC1_13276.1 | 977 | 8e-25 | 829 - 888 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_54457.1 | 441 | 2e-21 | 370 - 429 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00974 | 710 | 3e-25 | 618 - 677 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50827 | 384 | 1e-23 | 1 - 61 | 98 | 60 / 61 | minus | ABC50827 |
| Harvest35 | U35_37442 | 593 | 3e-25 | 120 - 179 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_95 | 755 | 3e-25 | 624 - 683 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_287 | 715 | 6e-22 | 610 - 669 | 97 | 58 / 60 | plus |
Contig Sequence (755 bp)
>U35_95 755 Hv_44K_v2 CCACGCGTACGATCATTTAGCAATAGCCATCTCATCATCTCCAGCTGAGCTCGGCTGCGC TACTATTCCAAAACTCATTAGGGATGGCTCGCGCTGCAGCTACTCAGCTCGTGCTGGTCG CCCTGGTGGCCGCCATGCTCCTCGTAGCCGCCGACGCGGCCATCTCCTGCGGTCAGGTGA GCTCTGCCTTGAGCCCCTGCATCTCCTATGCCCGCGGCAACGGCGCCAAACCGCCTGCGG CCTGCTGCAGCGGCGTCAAGAGACTGGCCGGCGCTGCCCAGAGCACCGCTGACAAGCAAG CGGCGTGCAAGTGCATCAAGAGCGCTGCGGGTGGGCTTAACGCTGGCAAGGCCGCCGGCA TCCCCTCCATGTGCGGCGTCAGCGTCCCCTACGCCATCAGCGCTTCCGTCGACTGCTCTA AGATTCGCTGATCAACCACTGCCCACCATGGGCGCCCGCCTATAGCGACGCCCGTCGCCG CTGAGGTCACGTATATATATGAATAAACGCTCTGATCTGATCTCCATGTGAGGGAGAAAG GAGTCTGCATGCTGAGCCAACTCTGTATGGCCGGCCAATATCGTACTATGGTTGTTTTTT ACTTTCTCTCCCTTTTGAGGAGACACGAGGCTTTATTGTACGTTGCACCATGTACACTTC CATTATATGGATTATACTTATATAATCATTTCATCCAAAAAAAAAAAAAAAAAAAAGAGC ATCTCCAACGACCGTGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_95 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |