- Gene HORVU3Hr1G013770
- Gene IDHORVU3Hr1G013770
- Location chr3H: 30559861 - 30564583
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u18118 | 76.8 | + | + | 4723 | -1430 | Containing |
Transcripts from Gene HORVU3Hr1G013770
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU3Hr1G013770.1 | 2424 | gene=HORVU3Hr1G013770 CDS=97-2091 |
| HORVU3Hr1G013770.2 | 2433 | gene=HORVU3Hr1G013770 CDS=97-2100 |
| HORVU3Hr1G013770.3 | 1702 | gene=HORVU3Hr1G013770 CDS=10-879 |
| HORVU3Hr1G013770.4 | 2242 | gene=HORVU3Hr1G013770 CDS=1-2004 |
| HORVU3Hr1G013770.5 | 2333 | gene=HORVU3Hr1G013770 CDS=429-1988 |
| HORVU3Hr1G013770.6 | 2317 | gene=HORVU3Hr1G013770 CDS=830-1972 |
| HORVU3Hr1G013770.7 | 2325 | gene=HORVU3Hr1G013770 CDS=827-1978 |
| HORVU3Hr1G013770.8 | 1832 | gene=HORVU3Hr1G013770 CDS=3-1607 |
| HORVU3Hr1G013770.9 | 1658 | gene=HORVU3Hr1G013770 CDS=630-1658 |
| HORVU3Hr1G013770.10 | 1913 | gene=HORVU3Hr1G013770 CDS=445-1587 |
| HORVU3Hr1G013770.11 | 1983 | gene=HORVU3Hr1G013770 CDS=56-1636 |
| HORVU3Hr1G013770.12 | 1494 | gene=HORVU3Hr1G013770 CDS=228-1256 |
| HORVU3Hr1G013770.13 | 1041 | gene=HORVU3Hr1G013770 CDS=1-1029 |
| HORVU3Hr1G013770.14 | 581 | gene=HORVU3Hr1G013770 CDS=2-229 |
Exon Structure of HORVU3Hr1G013770
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g41910.1 | +1 | 0.0 | 568 | 278/320 (87%) | protein|GTP-binding protein, putative, expressed |
| TAIR PP10 | AT3G12080 @ ARAPORT AT3G12080.1 @ TAIR |
+1 | 0.0 | 747 | 368/500 (74%) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663 |
| BRACH PP3 | Bradi4g12180.2.p | +1 | 0.0 | 956 | 496/531 (93%) | pacid=32786406 transcript=Bradi4g12180.2 locus=Bradi4g12180 ID=Bradi4g12180.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons