- Transcript HORVU3Hr1G013770.2
- Transcript IDHORVU3Hr1G013770.2
- Gene IDHORVU3Hr1G013770
Barley RTD
Exon Structure of HORVU3Hr1G013770.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 30560371 | 30559861 | + |
| chr3H | 2 | 30560762 | 30560701 | + |
| chr3H | 3 | 30560965 | 30560882 | + |
| chr3H | 4 | 30561371 | 30561078 | + |
| chr3H | 5 | 30561823 | 30561684 | + |
| chr3H | 6 | 30562313 | 30562226 | + |
| chr3H | 7 | 30562615 | 30562415 | + |
| chr3H | 8 | 30562874 | 30562713 | + |
| chr3H | 9 | 30563162 | 30562969 | + |
| chr3H | 10 | 30563897 | 30563747 | + |
| chr3H | 11 | 30564564 | 30564019 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g41910.1 | +1 | 0.0 | 568 | 278/320 (87%) | protein|GTP-binding protein, putative, expressed |
| TAIR PP10 | AT3G12080 @ ARAPORT AT3G12080.1 @ TAIR |
+1 | 0.0 | 747 | 368/500 (74%) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663 |
| BRACH PP3 | Bradi4g12180.2.p | +1 | 0.0 | 956 | 496/531 (93%) | pacid=32786406 transcript=Bradi4g12180.2 locus=Bradi4g12180 ID=Bradi4g12180.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2433 bp)
>HORVU3Hr1G013770.2 2433 150831_barley_pseudomolecules TTTCGGTGTGCCGGCCCAGCCGCGCGCCTTGTGCGTCGCGCTGGTTATTCGCCGCAAAAT GCGGTAAATAGGACAGGAGGTCCCCGCCGGCTGTAGATGCTCTTATCCCCTTCCGTCCCC CGCTGCCCCAGGCCTCGCGCTCTACGGCGCGCCATGGCCATGCCTTCCACTCCTTCCTCC TCGCGGCCGCCCATGCTGCACCCCGCCTCCAAAACTCCGAACCCGCCCCGCCTGCTGCCG CTCGTCACCAGAGGCGCTGCTGCCCCTCGCCCTCCTCTGCTCATCTCCTTCGCTCCGCCC GCGCCTGGTCGTCGCGGGCTCCGCGCCGCTGCCGCCCAACAACCCGCCTACGAAGATGGG GAGGAGGAAGAAGATGGGGAGGAGGATGGGGAGTGTTACAGCGAGGAGGAGGAGGAGGAT GAGGAGGAGTTGGACGTGGAGGCGATGGAGGAAGAGGCGCGGCGCGCCGCCGCCGACCTC GCCGCGCGCCTCGACCGCGAGCTCCGCGTCGATGGTGATGTTCGGGAGAAAAGAAGAACC ATGAGGGACAAGACATCAACAACATCTAAACATATCCCAGACAGTAAGCTTCCAAAGGTG GCTATTATTGGTAGACCTAATGTGGGTAAATCTGCGCTGTTCAATCGGCTTGTCGGGGGT AACAGGGCTATCGTTGTTGATGAACCTGGTGTAACAAGGGATCGTTTGTATGGACGATCT TATTGGGGTGATCAAGAGTTTATGGTTATTGATACTGGGGGTGTCATTACTCTATCGAAG TCTCAAGCAGGTGTAATGGAAGAACTTGCCATCACAACTACTGTTGGTATGGATGGGATT CCAATGGCCTCTCGAGAAGCTGCTATTGCTAGGATGCCATCAATGATTGAGAAGCAAGCT GTTGCCGCCGTTGAAGAAGCAGCTGTCCTTCTTTTCCTTGTGGATGGTCAGGCTGGTCTT GTGGCAGCTGATATAGAAATTGCTGATTGGTTACGTCGCAACTTCTCACACAAGTGCATC ATACTTGCTGTAAACAAATGTGAATCGCCACGGAAAGGGCAAATGCAAGCATTAGAATTT TGGTCATTAGGGTTTTCACCTTTACCAATATCTGCTATTACCGGCACTGGAACTGGAGAG CTCCTGGATATGGTCTCTTCGGAACTGAAAAAGTTCGAGGCATTACAGGGACTAGAAGGA TTGGATGATGTTGAAGAAGACGAAAACCGCGTTCCTGCTATTTCTATTGTTGGAAGACCA AATGTTGGAAAAAGTAGCATTCTAAATGCTTTGGTGGGAGAAGATAGAACTATTGTGAGC CCAGTTAGTGGTACCACCCGTGATGCCATTGATACTGAGTTAACCACAGAGGATGGGCAG AAATACAAACTCATCGATACGGCTGGCATCCGACGGAGAGCAGCAGTTGCTTCTGCTGGC AGCACAACTGAAACACTTTCAGTAAAGCGTGCATTTAGTGCAATTCGTCGATCTGATGTA GTTGCCCTTGTTATTGAAGCGATGGCCTGCGTCTCTGAGCAGGATTATAAAATTGCAGAA AGGATTGAGAAAGAGGGAAAGGCATGTGTCATTGTTGTGAACAAATGGGATACAATCCCA AACAAGAACAATGAGAGTACTACACATTATGAACAGGATGTAAGAGAGAAGCTTCGTGTA CTTGACTGGGCACCTATTGTTTACTGTTCTGCGATAAATGGGAACAGCGTTGAAAAGATT ATTTCTGCTGCTTCTTTGGTTGAAAAGGAAAGGTCTAGAAGACTCGGCACCTCTATTCTT AACCAAGTGATTAGAGAAGCTGTAGCATTCAAAGCACCACCCCGAACAAGAGGTGGCAAA AGAGGCCGCGTTTATTACACAACACAGGCTGCTGTTCGTCCACCAACGTTTGTTCTCTTC GTCAATGACGCAAAACTCTTCCCTGAGCCGTATCGGCGGTACATGCACAAGCAGCTCCGG TCTGACGCTGGATTCCCGGGCACGCCTATTCGTCTACTGTGGCGTAGCAGGAAGCGGACT GATAGGCAACAGAGGAGATCAAATACGGAGGCTCGTGGTGCACTTGTAGCGGCGAGTTAG CATGCGAAGCAATGTTGCTACCTTCAAAAACACAAGGAAAATGTGGCGAGCTAGGAGTAC CACGGTATCCCTTTTCCTCCTTGTTCACGCGCGTTTCCTGGCTGCGAACGTGTGACTATC AATGTGCCAAGAAGTTAAGGTTCATATTCCTCAACTACTGCCAAAGTTGAAGTGCGGTCA CTGTACTCTAATAGTATAATTTTATGGCCTCTCAACTGCTAGAATGTATGGAATTTTATG GCCCCTCTCTCTCTCTCAGATGAACATCAACTTTTCTGTTTTCATGCGATGTTGCATGCA TGTATGATTATTGATGGTTTCTTTTGTCTTCAA