- Gene BART1_0-u18118
- Gene IDBART1_0-u18118
- Location chr3H: 30559687 - 30565839
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU3Hr1G013780 | 15.0 | + | + | 923 | -5230 | Containing |
| HORVU3Hr1G013770 | 76.8 | + | + | 4723 | -1430 | Containing |
Transcripts from Gene BART1_0-u18118
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u18118.001 | 3882 | 3882 bp MSTRG.18118.1 MSTRG.18118 |
| BART1_0-u18118.002 | 3873 | 3873 bp MSTRG.18118.2 MSTRG.18118 |
| BART1_0-u18118.003 | 2651 | 2651 bp MSTRG.18118.3 MSTRG.18118 |
| BART1_0-u18118.004 | 2557 | 2557 bp MSTRG.18118.4 MSTRG.18118 |
| BART1_0-u18118.005 | 2484 | 2484 bp MSTRG.18118.5 MSTRG.18118 |
| BART1_0-u18118.006 | 2346 | 2346 bp MSTRG.18118.6 MSTRG.18118 |
| BART1_0-u18118.007 | 2536 | 2536 bp MSTRG.18118.7 MSTRG.18118 |
| BART1_0-u18118.008 | 2845 | 2845 bp MSTRG.18118.8 MSTRG.18118 |
| BART1_0-u18118.009 | 2559 | 2559 bp MSTRG.18118.9 MSTRG.18118 |
| BART1_0-u18118.010 | 2397 | 2397 bp MSTRG.18118.10 MSTRG.18118 |
| BART1_0-u18118.011 | 2056 | 2056 bp MSTRG.18118.11 MSTRG.18118 |
| BART1_0-u18118.012 | 2288 | 2288 bp MSTRG.18118.12 MSTRG.18118 |
| BART1_0-u18118.013 | 2283 | 2283 bp MSTRG.18118.13 MSTRG.18118 |
| BART1_0-u18118.014 | 2370 | 2370 bp MSTRG.18118.14 MSTRG.18118 |
| BART1_0-u18118.015 | 2183 | 2183 bp MSTRG.18118.15 MSTRG.18118 |
| BART1_0-u18118.016 | 2457 | 2457 bp MSTRG.18118.16 MSTRG.18118 |
| BART1_0-u18118.017 | 2479 | 2479 bp MSTRG.18118.17 MSTRG.18118 |
| BART1_0-u18118.018 | 1858 | 1858 bp MSTRG.18118.18 MSTRG.18118 |
| BART1_0-u18118.019 | 1624 | 1624 bp MSTRG.18118.19 MSTRG.18118 |
| BART1_0-u18118.020 | 2572 | 2572 bp MSTRG.18118.20 MSTRG.18118 |
| BART1_0-u18118.021 | 1854 | 1854 bp MSTRG.18118.21 MSTRG.18118 |
| BART1_0-u18118.022 | 1826 | 1826 bp MSTRG.18118.22 MSTRG.18118 |
| BART1_0-u18118.023 | 2015 | 2015 bp MSTRG.18118.23 MSTRG.18118 |
Exon Structure of BART1_0-u18118
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g41910.1 | +1 | 0.0 | 568 | 278/320 (87%) | protein|GTP-binding protein, putative, expressed |
| TAIR PP10 | AT3G12080 @ ARAPORT AT3G12080.1 @ TAIR |
+1 | 0.0 | 747 | 368/500 (74%) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663 |
| BRACH PP3 | Bradi4g12180.2.p | +1 | 0.0 | 956 | 496/531 (93%) | pacid=32786406 transcript=Bradi4g12180.2 locus=Bradi4g12180 ID=Bradi4g12180.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0005525 | GTP binding |
| GO:0009507 | chloroplast |
| GO:0009793 | embryo development ending in seed dormancy |
| GO:0016021 | integral component of membrane |
| GO:0042793 | plastid transcription |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H |
| GO:0042773 | ATP synthesis coupled electron transport |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons