Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u05011	80.8	-	-	3300	-786	Containing

Transcripts from Gene HORVU1Hr1G073050

Transcript	Length(bp)	Description
HORVU1Hr1G073050.1	1603	gene=HORVU1Hr1G073050 CDS=389-1123

Exon Structure of HORVU1Hr1G073050

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os05g37900.1	+2	6e-89	274	159/217 (73%)	protein|zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10	AT5G05830 @ ARAPORT AT5G05830.1 @ TAIR	+2	4e-45	157	89/159 (56%)	Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204
BRACH PP3	Bradi2g23610.2.p	+2	9e-95	289	177/241 (73%)	pacid=32776793 transcript=Bradi2g23610.2 locus=Bradi2g23610 ID=Bradi2g23610.2.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons