Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU1Hr1G073050	80.8	-	-	3300	-786	Containing

Transcripts from Gene BART1_0-u05011

Transcript	Length(bp)	Description
BART1_0-u05011.001	2389	2389 bp MSTRG.5011.1 MSTRG.5011
BART1_0-u05011.002	2312	2312 bp MSTRG.5011.2 MSTRG.5011
BART1_0-u05011.003	1763	1763 bp MSTRG.5011.3 MSTRG.5011
BART1_0-u05011.004	1611	1611 bp MSTRG.5011.4 MSTRG.5011

Exon Structure of BART1_0-u05011

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os05g37900.1	+2	3e-86	274	159/217 (73%)	protein|zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10	AT5G05830 @ ARAPORT AT5G05830.1 @ TAIR	+2	7e-44	157	89/159 (56%)	Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204
BRACH PP3	Bradi2g23610.2.p	+2	3e-92	290	177/241 (73%)	pacid=32776793 transcript=Bradi2g23610.2 locus=Bradi2g23610 ID=Bradi2g23610.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0008270	zinc ion binding
GO:0003735	structural constituent of ribosome
GO:0016021	integral component of membrane
GO:0005840	ribosome
GO:0016874	ligase activity
GO:0006412	translation

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons