- Transcript HORVU1Hr1G073050.1
- Transcript IDHORVU1Hr1G073050.1
- Gene IDHORVU1Hr1G073050
Barley RTD
Exon Structure of HORVU1Hr1G073050.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 500894741 | 500894039 | - |
| chr1H | 2 | 500896865 | 500896331 | - |
| chr1H | 3 | 500897338 | 500896974 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g37900.1 | +2 | 6e-89 | 274 | 159/217 (73%) | protein|zinc finger, C3HC4 type domain containing protein, expressed |
| TAIR PP10 | AT5G05830 @ ARAPORT AT5G05830.1 @ TAIR |
+2 | 4e-45 | 157 | 89/159 (56%) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204 |
| BRACH PP3 | Bradi2g23610.2.p | +2 | 9e-95 | 289 | 177/241 (73%) | pacid=32776793 transcript=Bradi2g23610.2 locus=Bradi2g23610 ID=Bradi2g23610.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1603 bp)
>HORVU1Hr1G073050.1 1603 150831_barley_pseudomolecules CTCGCCTCCTCCTGTTCCTCCCCCGACAAGCACAGAACTCGTCTTTTCTCCTTTCTCTTT TCCCCCTCGCCTCACTCACTCACTGCCAGTACAGTACAATCCCTCCGCTCTTTATTCCCC TCGCCTCCGACTCGCCCTTGTCCCCTTGCGTGTCCGTCCCGCGGTCATGGATCAAGAAAC CTCACGAGAACCCCGCCGCTCCAGCCGTATGTCGCCGCATTAGTCGGGGGGAGGGCCCAG TCCCCGCCGGATCGCTCCTCGCGATCGCATTGCATGCGCGCCTCTTGATCTTGTCTTTAT CCTGGACACGGATTGGTTTCCGTCGCCGGATTCGGAGCGGCGGCATTCTGGTTGGTTGGT ACGGAGCCGCGTCTGAGGAGGAGGAGCGATGGTCGGCGACGGCGCGCGGTCGGCAGTCGC CGCCGGGGTCCAAGACATCGAGCTCGGCGAGCGGCGCCGCGGTGATGAGTTCCTGGACGA CGACGGCGAGGAGGAGGAGGAGGAGGGCAGCCAGTACTTCACGGACGCGGAGGACCGGTC GTGGCCCTCGCACTCGCGCCACGAGTCCGCCGCCTTCGAGGACTGCATCTCGCGGTGCTC CTGCGGCGGCGCCGACAGCGACGCGGACATCGAGGCCGGCGGCGGGCACTTCAGGAAGTC GTCCTGCGTGTCCGAGTGCTCGCTGGACGACGTCGACCTGGAGGCCGGGCTGGCCGAGAG CGCCAAGGGCAGCCCCGACCCCGAGAAGGCCGAGAGGAACTGCCGCATTTGCCACCTCGG CCTCGAGAGCGCGGCGGCCGAGTCCGGCGCCGGCATCACGCTCGGCTGCTCCTGCAAGGG CGACCTCTCCTACTCCCACAAGCAGTGCGCCGAGACCTGGTTCAAGATCAGAGGCAACAA GACCTGTGAAATTTGCAGCTCAGTCGCATGCAATGTGGTAGTTTTAGGCGATCCAGAGTT CACCGAGCAGTCGAATGAATCAACTACCGCAGCAGCCGGGCATACATTTCCAACCGAAAC TAGGAGGTTTTGGCAAGGGCACCGGTTCCTCAACTTCCTTCTAGCATGCATGGTTTTCGC CTTCGTCATCTCATGGCTCTTCCACTTCAATGTCCCGGGGTGAGTTCTCGCAGCCAATGG CCCCTCAATAAAAGCCACAGGGCCATTGAGGCAAACATGTGGGTCAGATTCAGCAAATCT GGAGAGCGGGATGAGGTGAAGTTATTAAGCAGTGAAGAGGTACAAATGAGTGTGTATGTG GGGCGCGACGGCCTTAAGTTTCTCTGGATCAGGATCCGGTACGAAAGAAGCCCTGATGAA GATCTGCCGCCGTTCATGAATTTGGGTGAAGGTAGCAAACAGCGAAGAAGAGAAGGTGTG TTGTTCCGGGATTGTTTTAGGTTTGAAGGACATGTTTTATGTTAGTGTCGTCGTTTCCTT TAGCTTGGCCGTTTTCGCCTTGTGAGTTGGTGTGATATGTGCAGATTTTGTTTTATGCCT TCCATCCAGTGTTTATAATCCTGATAAACAGGATGAGGTGGTAGCTGTGCTTAGCAGGAA GAGAAACCCCACTGCCAGCTCAGGTTCCGAATAATGAAGAGAA