Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G103280	77.3	-	-	7390	-2170	Containing
HORVU5Hr1G103300	5.8	-	-	559	-9001	Containing

Transcripts from Gene BART1_0-u39718

Transcript	Length(bp)	Description
BART1_0-u39718.001	5895	5895 bp MSTRG.39718.1 MSTRG.39718
BART1_0-u39718.002	3727	3727 bp MSTRG.39718.2 MSTRG.39718
BART1_0-u39718.003	3740	3740 bp MSTRG.39718.3 MSTRG.39718
BART1_0-u39718.004	4173	4173 bp MSTRG.39718.4 MSTRG.39718
BART1_0-u39718.005	4659	4659 bp MSTRG.39718.5 MSTRG.39718
BART1_0-u39718.006	2453	2453 bp MSTRG.39718.6 MSTRG.39718
BART1_0-u39718.007	2573	2573 bp MSTRG.39718.7 MSTRG.39718
BART1_0-u39718.008	2548	2548 bp MSTRG.39718.8 MSTRG.39718
BART1_0-u39718.009	2643	2643 bp MSTRG.39718.9 MSTRG.39718
BART1_0-u39718.010	2867	2867 bp MSTRG.39718.10 MSTRG.39718
BART1_0-u39718.011	2731	2731 bp MSTRG.39718.11 MSTRG.39718
BART1_0-u39718.012	2817	2817 bp MSTRG.39718.12 MSTRG.39718
BART1_0-u39718.013	2845	2845 bp MSTRG.39718.13 MSTRG.39718
BART1_0-u39718.014	2563	2563 bp MSTRG.39718.14 MSTRG.39718
BART1_0-u39718.015	2365	2365 bp MSTRG.39718.15 MSTRG.39718
BART1_0-u39718.016	2284	2284 bp MSTRG.39718.16 MSTRG.39718
BART1_0-u39718.017	2237	2237 bp MSTRG.39718.17 MSTRG.39718

Exon Structure of BART1_0-u39718

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os02g35150.1	+3	6e-109	330	165/225 (73%)	protein|splicing factor U2AF, putative, expressed
TAIR PP10	AT1G10320 @ ARAPORT AT1G10320.1 @ TAIR	+3	7e-66	239	109/143 (76%)	Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757
BRACH PP3	Bradi3g45900.1.p	+3	1e-158	395	197/242 (81%)	pacid=32822846 transcript=Bradi3g45900.1 locus=Bradi3g45900 ID=Bradi3g45900.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0089701	U2AF
GO:0003677	DNA binding
GO:0003723	RNA binding
GO:0046872	metal ion binding
GO:0005681	spliceosomal complex
GO:0000398	mRNA splicing, via spliceosome

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons