Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u3971877.3--7390-2170Containing




Transcripts from Gene HORVU5Hr1G103280

TranscriptLength(bp)Description
HORVU5Hr1G103280.12948gene=HORVU5Hr1G103280 CDS=1141-2034
HORVU5Hr1G103280.24080gene=HORVU5Hr1G103280 CDS=2273-3166
HORVU5Hr1G103280.32560gene=HORVU5Hr1G103280 CDS=3-1664
HORVU5Hr1G103280.43835gene=HORVU5Hr1G103280 CDS=2090-2983
HORVU5Hr1G103280.53695gene=HORVU5Hr1G103280 CDS=1951-2844
HORVU5Hr1G103280.63974gene=HORVU5Hr1G103280 CDS=2231-3124
HORVU5Hr1G103280.72675gene=HORVU5Hr1G103280 CDS=932-1825
HORVU5Hr1G103280.82505gene=HORVU5Hr1G103280 CDS=3-1655
HORVU5Hr1G103280.91970gene=HORVU5Hr1G103280 CDS=228-1121
HORVU5Hr1G103280.103004gene=HORVU5Hr1G103280 CDS=1264-2157
HORVU5Hr1G103280.113757gene=HORVU5Hr1G103280 CDS=2018-2911
HORVU5Hr1G103280.123701gene=HORVU5Hr1G103280 CDS=1966-2859
HORVU5Hr1G103280.132569gene=HORVU5Hr1G103280 CDS=834-1727
HORVU5Hr1G103280.143840gene=HORVU5Hr1G103280 CDS=2105-2998
HORVU5Hr1G103280.152672gene=HORVU5Hr1G103280 CDS=939-1832
HORVU5Hr1G103280.163904gene=HORVU5Hr1G103280 CDS=2171-3064
HORVU5Hr1G103280.174150gene=HORVU5Hr1G103280 CDS=2417-3310
HORVU5Hr1G103280.181973gene=HORVU5Hr1G103280 CDS=241-1137
HORVU5Hr1G103280.192764gene=HORVU5Hr1G103280 CDS=1035-1928
HORVU5Hr1G103280.202448gene=HORVU5Hr1G103280 CDS=744-1637
HORVU5Hr1G103280.213646gene=HORVU5Hr1G103280 CDS=1947-2840
HORVU5Hr1G103280.223785gene=HORVU5Hr1G103280 CDS=2086-2979
HORVU5Hr1G103280.232466gene=HORVU5Hr1G103280 CDS=767-1660
HORVU5Hr1G103280.242095gene=HORVU5Hr1G103280 CDS=475-1368
HORVU5Hr1G103280.253377gene=HORVU5Hr1G103280 CDS=1959-2852
HORVU5Hr1G103280.261299gene=HORVU5Hr1G103280 CDS=1-1299
HORVU5Hr1G103280.27783gene=HORVU5Hr1G103280 CDS=1-783



Exon Structure of HORVU5Hr1G103280


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g35150.1 +2 1e-109 332 180/242 (74%) protein|splicing factor U2AF, putative, expressed
TAIR PP10 AT1G10320 @ ARAPORT
AT1G10320.1 @ TAIR
+2 9e-67 241 110/144 (76%) Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757
BRACH PP3 Bradi3g45900.1.p +2 2e-159 397 198/243 (81%) pacid=32822846 transcript=Bradi3g45900.1 locus=Bradi3g45900 ID=Bradi3g45900.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons