- Gene HORVU5Hr1G103280
- Gene IDHORVU5Hr1G103280
- Location chr5H: 615388609 - 615395998
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u39718 | 77.3 | - | - | 7390 | -2170 | Containing |
Transcripts from Gene HORVU5Hr1G103280
Transcript | Length(bp) | Description |
---|---|---|
HORVU5Hr1G103280.1 | 2948 | gene=HORVU5Hr1G103280 CDS=1141-2034 |
HORVU5Hr1G103280.2 | 4080 | gene=HORVU5Hr1G103280 CDS=2273-3166 |
HORVU5Hr1G103280.3 | 2560 | gene=HORVU5Hr1G103280 CDS=3-1664 |
HORVU5Hr1G103280.4 | 3835 | gene=HORVU5Hr1G103280 CDS=2090-2983 |
HORVU5Hr1G103280.5 | 3695 | gene=HORVU5Hr1G103280 CDS=1951-2844 |
HORVU5Hr1G103280.6 | 3974 | gene=HORVU5Hr1G103280 CDS=2231-3124 |
HORVU5Hr1G103280.7 | 2675 | gene=HORVU5Hr1G103280 CDS=932-1825 |
HORVU5Hr1G103280.8 | 2505 | gene=HORVU5Hr1G103280 CDS=3-1655 |
HORVU5Hr1G103280.9 | 1970 | gene=HORVU5Hr1G103280 CDS=228-1121 |
HORVU5Hr1G103280.10 | 3004 | gene=HORVU5Hr1G103280 CDS=1264-2157 |
HORVU5Hr1G103280.11 | 3757 | gene=HORVU5Hr1G103280 CDS=2018-2911 |
HORVU5Hr1G103280.12 | 3701 | gene=HORVU5Hr1G103280 CDS=1966-2859 |
HORVU5Hr1G103280.13 | 2569 | gene=HORVU5Hr1G103280 CDS=834-1727 |
HORVU5Hr1G103280.14 | 3840 | gene=HORVU5Hr1G103280 CDS=2105-2998 |
HORVU5Hr1G103280.15 | 2672 | gene=HORVU5Hr1G103280 CDS=939-1832 |
HORVU5Hr1G103280.16 | 3904 | gene=HORVU5Hr1G103280 CDS=2171-3064 |
HORVU5Hr1G103280.17 | 4150 | gene=HORVU5Hr1G103280 CDS=2417-3310 |
HORVU5Hr1G103280.18 | 1973 | gene=HORVU5Hr1G103280 CDS=241-1137 |
HORVU5Hr1G103280.19 | 2764 | gene=HORVU5Hr1G103280 CDS=1035-1928 |
HORVU5Hr1G103280.20 | 2448 | gene=HORVU5Hr1G103280 CDS=744-1637 |
HORVU5Hr1G103280.21 | 3646 | gene=HORVU5Hr1G103280 CDS=1947-2840 |
HORVU5Hr1G103280.22 | 3785 | gene=HORVU5Hr1G103280 CDS=2086-2979 |
HORVU5Hr1G103280.23 | 2466 | gene=HORVU5Hr1G103280 CDS=767-1660 |
HORVU5Hr1G103280.24 | 2095 | gene=HORVU5Hr1G103280 CDS=475-1368 |
HORVU5Hr1G103280.25 | 3377 | gene=HORVU5Hr1G103280 CDS=1959-2852 |
HORVU5Hr1G103280.26 | 1299 | gene=HORVU5Hr1G103280 CDS=1-1299 |
HORVU5Hr1G103280.27 | 783 | gene=HORVU5Hr1G103280 CDS=1-783 |
Exon Structure of HORVU5Hr1G103280
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g35150.1 | +2 | 1e-109 | 332 | 180/242 (74%) | protein|splicing factor U2AF, putative, expressed |
TAIR PP10 | AT1G10320 @ ARAPORT AT1G10320.1 @ TAIR |
+2 | 9e-67 | 241 | 110/144 (76%) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757 |
BRACH PP3 | Bradi3g45900.1.p | +2 | 2e-159 | 397 | 198/243 (81%) | pacid=32822846 transcript=Bradi3g45900.1 locus=Bradi3g45900 ID=Bradi3g45900.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons