- Gene BART1_0-u35721
- Gene IDBART1_0-u35721
- Location chr5H: 405759987 - 405766076
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU5Hr1G051890 | 97.5 | + | + | 5934 | -156 | Containing |
Transcripts from Gene BART1_0-u35721
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u35721.001 | 3294 | 3294 bp MSTRG.35721.1 MSTRG.35721 |
| BART1_0-u35721.002 | 3226 | 3226 bp MSTRG.35721.2 MSTRG.35721 |
| BART1_0-u35721.003 | 3277 | 3277 bp MSTRG.35721.3 MSTRG.35721 |
| BART1_0-u35721.004 | 1406 | 1406 bp MSTRG.35721.4 MSTRG.35721 |
| BART1_0-u35721.005 | 1218 | 1218 bp MSTRG.35721.5 MSTRG.35721 |
| BART1_0-u35721.006 | 1342 | 1342 bp MSTRG.35721.6 MSTRG.35721 |
| BART1_0-u35721.007 | 2885 | 2885 bp MSTRG.35721.7 MSTRG.35721 |
| BART1_0-u35721.008 | 1290 | 1290 bp MSTRG.35721.8 MSTRG.35721 |
Exon Structure of BART1_0-u35721
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g21250.2 | +3 | 1e-93 | 297 | 171/183 (93%) | protein|clathrin adaptor complex small chain domain containing protein, expressed |
| TAIR PP10 | AT3G09800 @ ARAPORT AT3G09800.1 @ TAIR |
+3 | 3e-68 | 226 | 127/178 (71%) | Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179 |
| BRACH PP3 | Bradi4g08770.4.p | +3 | 3e-98 | 309 | 178/183 (97%) | pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
| GO:0016021 | integral component of membrane |
| GO:0006891 | intra-Golgi vesicle-mediated transport |
| GO:0000139 | Golgi membrane |
| GO:0006886 | intracellular protein transport |
| GO:0030126 | COPI vesicle coat |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons