Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u3572197.5++5934-156Containing




Transcripts from Gene HORVU5Hr1G051890

TranscriptLength(bp)Description
HORVU5Hr1G051890.11426gene=HORVU5Hr1G051890 CDS=186-734
HORVU5Hr1G051890.2709gene=HORVU5Hr1G051890 CDS=202-609
HORVU5Hr1G051890.3998gene=HORVU5Hr1G051890 CDS=181-729
HORVU5Hr1G051890.4914gene=HORVU5Hr1G051890 CDS=170-499
HORVU5Hr1G051890.51404gene=HORVU5Hr1G051890 CDS=164-712
HORVU5Hr1G051890.6906gene=HORVU5Hr1G051890 CDS=143-691
HORVU5Hr1G051890.7735gene=HORVU5Hr1G051890 CDS=87-635
HORVU5Hr1G051890.8739gene=HORVU5Hr1G051890 CDS=90-638
HORVU5Hr1G051890.9549gene=HORVU5Hr1G051890 CDS=1-549
HORVU5Hr1G051890.10523gene=HORVU5Hr1G051890 CDS=1-423
HORVU5Hr1G051890.111693gene=HORVU5Hr1G051890 CDS=418-1191
HORVU5Hr1G051890.121649gene=HORVU5Hr1G051890 CDS=198-1049



Exon Structure of HORVU5Hr1G051890


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3None-----




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons