Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU2Hr1G096850	86.0	+	+	2307	-376	Containing
HORVU2Hr1G096860	12.8	+	+	342	-2341	Containing

Transcripts from Gene BART1_0-u14163

Transcript	Length(bp)	Description
BART1_0-u14163.001	1906	1906 bp MSTRG.14163.1 MSTRG.14163
BART1_0-u14163.002	1911	1911 bp MSTRG.14163.2 MSTRG.14163
BART1_0-u14163.003	2074	2074 bp MSTRG.14163.3 MSTRG.14163

Exon Structure of BART1_0-u14163

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os04g47020.1	+2	2e-167	485	271/352 (77%)	protein|genetic modifier, putative, expressed
TAIR PP10	AT4G11570 @ ARAPORT AT4G11570.2 @ TAIR	+2	3e-61	209	96/197 (49%)	Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373
BRACH PP3	Bradi5g18060.7.p	+2	5e-179	516	278/340 (82%)	pacid=32810154 transcript=Bradi5g18060.7 locus=Bradi5g18060 ID=Bradi5g18060.7.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0000287	magnesium ion binding
GO:0005975	carbohydrate metabolic process
GO:0140096	catalytic activity, acting on a protein
GO:0071586	CAAX-box protein processing
GO:0016021	integral component of membrane
GO:0008801	beta-phosphoglucomutase activity
GO:0016787	hydrolase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons