Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u1416386.0++2307-376Containing




Transcripts from Gene HORVU2Hr1G096850

TranscriptLength(bp)Description
HORVU2Hr1G096850.11521gene=HORVU2Hr1G096850 CDS=274-1311
HORVU2Hr1G096850.21516gene=HORVU2Hr1G096850 CDS=269-1306
HORVU2Hr1G096850.31386gene=HORVU2Hr1G096850 CDS=125-1162
HORVU2Hr1G096850.4384gene=HORVU2Hr1G096850 CDS=1-384



Exon Structure of HORVU2Hr1G096850


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os04g47020.1 +1 3e-170 485 271/352 (77%) protein|genetic modifier, putative, expressed
TAIR PP10 AT4G11570 @ ARAPORT
AT4G11570.2 @ TAIR
+1 8e-63 209 96/197 (49%) Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373
BRACH PP3 Bradi5g18060.7.p +1 0.0 516 278/340 (82%) pacid=32810154 transcript=Bradi5g18060.7 locus=Bradi5g18060 ID=Bradi5g18060.7.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons