- Gene HORVU2Hr1G096850
- Gene IDHORVU2Hr1G096850
- Location chr2H: 677021975 - 677024281
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u14163 | 86.0 | + | + | 2307 | -376 | Containing |
Transcripts from Gene HORVU2Hr1G096850
Transcript | Length(bp) | Description |
---|---|---|
HORVU2Hr1G096850.1 | 1521 | gene=HORVU2Hr1G096850 CDS=274-1311 |
HORVU2Hr1G096850.2 | 1516 | gene=HORVU2Hr1G096850 CDS=269-1306 |
HORVU2Hr1G096850.3 | 1386 | gene=HORVU2Hr1G096850 CDS=125-1162 |
HORVU2Hr1G096850.4 | 384 | gene=HORVU2Hr1G096850 CDS=1-384 |
Exon Structure of HORVU2Hr1G096850
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os04g47020.1 | +1 | 3e-170 | 485 | 271/352 (77%) | protein|genetic modifier, putative, expressed |
TAIR PP10 | AT4G11570 @ ARAPORT AT4G11570.2 @ TAIR |
+1 | 8e-63 | 209 | 96/197 (49%) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373 |
BRACH PP3 | Bradi5g18060.7.p | +1 | 0.0 | 516 | 278/340 (82%) | pacid=32810154 transcript=Bradi5g18060.7 locus=Bradi5g18060 ID=Bradi5g18060.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons