- Transcript BART1_0-u14163.002
- Transcript IDBART1_0-u14163.002
- Gene IDBART1_0-u14163
Barley RTD
Exon Structure of BART1_0-u14163.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 677022138 | 677021848 | + |
| chr2H | 2 | 677024530 | 677022911 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 7.97624 | 9.6851 | 8.52962 |
| morex | ETI | 39.5263 | 58.9583 | 54.8107 |
| morex | LEA | 16.1361 | 17.7804 | 13.3482 |
| morex | EPI | 11.0236 | 6.01458 | 11.5488 |
| morex | ROO | 0.367658 | 1.33208 | 1.21157 |
| morex | ROO2 | 0.287446 | 0 | 0.358705 |
| morex | NOD | 11.2441 | 11.3797 | 15.7792 |
| morex | RAC | 9.917 | 6.06566 | 6.55559 |
| morex | INF1 | 23.78 | 25.184 | 21.8487 |
| morex | INF2 | 25.5616 | 21.6085 | 21.2859 |
| morex | CAR5 | 10.7426 | 12.3771 | 15.3236 |
| morex | CAR15 | 0.844824 | 1.02403 | 0.683487 |
| morex | LEM | 20.6431 | 12.6901 | 16.4909 |
| morex | LOD | 6.11857 | 8.84508 | 5.70508 |
| morex | PAL | 8.66761 | 12.9205 | 11.9252 |
| morex | SEN | 41.062 | 17.7217 | 17.5584 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g47020.1 | +2 | 3e-168 | 485 | 271/352 (77%) | protein|genetic modifier, putative, expressed |
| TAIR PP10 | AT4G11570 @ ARAPORT AT4G11570.2 @ TAIR |
+2 | 1e-61 | 209 | 96/197 (49%) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373 |
| BRACH PP3 | Bradi5g18060.7.p | +2 | 8e-180 | 516 | 278/340 (82%) | pacid=32810154 transcript=Bradi5g18060.7 locus=Bradi5g18060 ID=Bradi5g18060.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1911 bp)
>BART1_0-u14163.002 1911 150831_barley_pseudomolecules GCACACCCCCTCCCCACCTCGCCCGGTGTAGGCACGCACACGCTGACAAAGGGCCCCTCG CCCCTCGTGTCCCAGCTGCCATGGACACGGAGCGGCCGCCGCGAGGGCCAATGGACGAGG CAGCCGGCCGCATTATTGCCTATCCGGATGGGAGGCCATCCCCACCATCCAAGGGAAGAA GCGCCGGGCACCGAGCGAGCCGTGCGGGGGCGCCTCCTCTACTCCCTCCCCACTCCCGCC GATGCTCTTCAGCTCCACCTCCGACCTCCGCATCATCTTCTTCTTCCACGGCACAGGTGA AGTGTTCAGCTATGCTTCTCGTTGACCAGTCACACTTGAACTGAATCGACTTTGCTGCGA AGTGCTTGACAGTTTCAGTGAAAGTGTAGAGGACTTAGCAATGATCTCATCCATCAGCTT ACTTGACAGTTCCCACCAGCTCATTCAGAAACTGTACAGAAAATGCTGGCCAAGTAACTC AAATTCCAAACTGAACATGCATGCAACCGCGAAATCTGGGGGTAAGAGCATGAGGGTGAA GATGGCACTTCTGAAGCCCCATGCAACTGACTTCAAGAGGAATCATCAAGCCCACGAGGA AGACAATGTGTTTTACAAATTAGTTTATAGGCTCCCTGAAAGCCTTAGCTGTCTGTACAC CAGTCAAAAACCAGTCAGAAAGAAGAAACAACAGAAGCAAGGAACTGTGTCCAGTAACCG GTTTGGTGTGATCTTGGAGTGGGAGGGAGTTGTTGTGGAAGATGATGACCCGGACCTGGA GCCCCGAGTGTGGTATGTATTATCACTTGAAGAGGCGAAGTCTTTCCCTCCGGATGAAAC GCTGAAGAAAATCGAGGGAATGAGAACTGATCAGGCCATCTCAGAAGTCTTAAGTTGGTC GAAAGATCGACAAGAAATCGAAAGGTTAGCAGCACGTAAGGAGGTCATATATCAGAAACT CCGAGGTACTTTCTATCAGCTGCGGCCAGGTGTTCTCGACTTCTTGAACACCCTTGTGGA TTCTGATATTCCAATAGCAGTAACAGCTTCTCGCCCCAGAATGAGCCTGGAAGAAAGCAT AAAAGCCGTTGGTCTGCAAGGCTATTTCGATGTCATAGTGGCGGCGGAGGACTTCCACCG AGGGAAACCCGAGGGTGAGATTTTTGAGGTTGCAGCAGACCAGCTTGGTCTTGAGCCTGA TGTCTGTCTTGTGATGGGTAGCTCAAACTTGACGACGCAGTCTGCACATACTGCTGGGAT GAGGTGTGTGGCGGTTGCAAGCCGGCACCCTGCCTATGAACTTCATGCAGCAAACCATGT TGTGAGATGGCTCGATCAACTCTCTGTTGTTGACCTGCAGAGGCTCGCCAATGGCGAGGT TCTTGGGCGCAGGGGCAGACAATCTGACATGGACATGGAGATTGTGATCGAGGAGTGATG TTTCTGCAGGCACTTATCTACTACTAATATATAACTGTGTTGTAACTTCAGTACTGCATT ACATTTTGTGACAGACCAAGTAGTGTAACACGTAACAGATCAGCGTTCACTTCTTGTTTT CTTGTAATGCATAACTGAAACTCAGTTAGCTTAGATGCTTTCAATCATCAGAAAGGAGTT GGAAGCGAAGAAACTTTCCACATTGCAAGTCTTTTGCTGTGCGGTACATATACTACCTCT TATATTTTGTTCCCCTGGCCATTTCAGAGATGAACGTTGGGGTTTTTTAGTGCTATATTG GTGAGTGACGATTAACTGAAAATATGTGGAAAATGCTTTATTTACAGAAAGTGTTGGCAA TAATCATGTCACATGCATTAAAGTCCTAATCAGCAGGGAGTATATGCGATGTTTGAGATT GCATGAGCTAGCTCTACGTGTTGTAGTAGCATTGGAGTTGTCTGTATGTTT
Protein Sequence (345 aa)
>BART1_0-u14163.002 345 150831_barley_pseudomolecules MISSISLLDSSHQLIQKLYRKCWPSNSNSKLNMHATAKSGGKSMRVKMALLKPHATDFKR NHQAHEEDNVFYKLVYRLPESLSCLYTSQKPVRKKKQQKQGTVSSNRFGVILEWEGVVVE DDDPDLEPRVWYVLSLEEAKSFPPDETLKKIEGMRTDQAISEVLSWSKDRQEIERLAARK EVIYQKLRGTFYQLRPGVLDFLNTLVDSDIPIAVTASRPRMSLEESIKAVGLQGYFDVIV AAEDFHRGKPEGEIFEVAADQLGLEPDVCLVMGSSNLTTQSAHTAGMRCVAVASRHPAYE LHAANHVVRWLDQLSVVDLQRLANGEVLGRRGRQSDMDMEIVIEE