- Transcript BART1_0-u58660.002
- Transcript IDBART1_0-u58660.002
- Gene IDBART1_0-u58660
Barley RTD
Exon Structure of BART1_0-u58660.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 84396053 | 84395457 | + |
| chrUn | 2 | 84399237 | 84396677 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.87857 | 9.89195 | 4.65517 |
| morex | ETI | 5.36306 | 4.26538 | 4.66202 |
| morex | LEA | 4.74006 | 3.55743 | 3.73764 |
| morex | EPI | 2.55951 | 2.74261 | 3.22315 |
| morex | ROO | 3.56217 | 4.78867 | 2.57872 |
| morex | ROO2 | 5.07592 | 4.31494 | 3.96105 |
| morex | NOD | 10.0468 | 6.73811 | 4.39838 |
| morex | RAC | 9.50493 | 7.02496 | 9.8395 |
| morex | INF1 | 9.55641 | 7.06246 | 7.50786 |
| morex | INF2 | 9.03786 | 8.88353 | 10.8335 |
| morex | CAR5 | 10.1861 | 9.96929 | 5.91143 |
| morex | CAR15 | 2.35757 | 2.01587 | 3.26504 |
| morex | LEM | 7.50718 | 6.03691 | 5.38236 |
| morex | LOD | 7.36358 | 6.40139 | 9.1771 |
| morex | PAL | 7.83849 | 7.13118 | 4.11698 |
| morex | SEN | 2.31343 | 4.13267 | 2.31298 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g07200.2 | +2 | 0.0 | 774 | 364/442 (82%) | protein|protein-O-fucosyltransferase 1, putative, expressed |
| TAIR PP10 | AT3G05320 @ ARAPORT AT3G05320.1 @ TAIR |
+2 | 3e-160 | 480 | 255/456 (56%) | Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445 |
| BRACH PP3 | Bradi3g05130.3.p | +2 | 0.0 | 838 | 395/442 (89%) | pacid=32821848 transcript=Bradi3g05130.3 locus=Bradi3g05130 ID=Bradi3g05130.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3158 bp)
>BART1_0-u58660.002 3158 150831_barley_pseudomolecules GTTGAAAGAAAACAGAGGGGATTCGGCTAAGCAAACCCCTCTTATCAAATGGACGTCCGA GTTTTTGTGGGGTTTCTGATTTTTCTGGGGATTTTTCTCTCGAAACCTCGTGAATCCCCA TGCCAAAGGAGGCCTGAAGGCAAGGAAATCCCCTTCCACTGGCAAGCTGGGCCCAAGAGT GATAGCACGCGCACGCGCTCCCTTGACCTACCGGCATCGTGTTTTTCCCCTTCCCGAATT TCTCTCCCCCCTTCCCATTTCCGGTGGTGATCTGCCTCCGACGACCGGAACCACGTCAAG CGTTTGACGCTCTCATCTTCTACCCTCTACGCTAGATCGAATCACTCTTTCTACCTGGAT CAGGCCTCACGGAGTAGCGGAGGAGGAGGAACGGCGGGGCCTTGGAGAGAGGGCTGGGCG CTTCCGACGGCGGCGGAGACAGAGCCGTGCCTGCCGGCTGCAGAGACGATTGGGCGTGGA GGTGAGGCGTAGACCTGGCCCATTCTAGGTCCGGCCGAGGGCAGCAATTTGGGGGACAGC AGCGCACAGTTGCAGAGTTTCGGTGAACACAAGTGATTCAAAAGACCAAGTAAGAAGTCT TGTGGAGCATACGCTAAATTGTCAGCAGAAGGGTCAAAGCCTATGATTGTAACAGCATGA ACCGAGCTGGAAACCTGATTTACTCATTGCCCAGGAAGAACTGGTGAAGCCATCCAAGCG TATTTGGTTATTGATTCCATTATATTGCAGCACAGTATGTACTTCCGCTGGGCGATAAAG TTGACCTGGTAGAATGAGAAGGAATTAAAGAACTGTTTCAATGAACATCCTACTAGACCT TAAGCATCTCAAGCACATTAGCTTGCCGGCGAGGCTTATTATTTGCAAGTGCCTTCTCAT AGTGATTGGCCTTATTGTATTGAGAGCAATTATCTCCCCTTTTCTTGCCATTAGCTTGTC TGAGAAGAGTTTTTATGAGTCACCAACCCTTGACTTGTTCCCTGGAGTTAGGAAAGGCAA GTTTGTTGAGGTCCCACAGATTATATGGGGATTGAACAATCAGAAGATTGCATTTGCCAG AGCATGCTTGACGGCAAGATTCCTGAACCGTTCTCTACTCATGCCAAGTCTGAGTGCTTC GCTTTTCTACAAAGAGGTTGACTTGCTGCAGCCTATTGCTTTCGACAAGGTATTTGACCT TAATAAGTTCAATGCCCATTGTCATGGGTTTGTAAGGGTAGCTCGGTATTCAGAAGTTTC GAATCGTACCGAGCCTTTCAAACTTCAAAAGGGCAGTGGTAGGAGGTGGACAGTGGAGAG AGACTTGGATCAACTGCAGCAATCCAGATTGGGGGAGGCCGATGGCTTTGAAGTGATTCA TGTCACTGGGAAGCATCCATTTCTATGGCCTGACCATTGGCCAGTGAAAGACTATGCCAG GATCTTCGATTGCCTTGCTGTAGCTCCTGAGATAGAAACTGAAGTTGTCAGGGTCGTATC GAAGATTAAAGATGCAGGGAAAAAAGCAAGGCATGATGCTGCCATTTCTCATAATAAGAA GAGGATAGATAGTTTGACAAATCTTCCTGTGCAGTACATTGCTGTTCACATGAGAATAGA GAAAGATTGGATGATCCATTGCAAGAAGTGGGAGCAGCGGTCCAATTTAAAGGAAATCTG TAGCAGCAAAGGAGAGATCATTCATAAGGTCTCACAGATCACTGACCTACGTCGCCCGCT TGTAGTTTATCTTGCAGTAGCTGACAGCCTTCTAGAAGACGATTCAGTAACCAGTGGTTG GAGAGTTGGTATGGTTGCTTATGAGAAGAAGAAACTTGGAGTTACTGACATATATGATAG GCAGCCTTACCTTATAAAGTCTGCCATTGACTTTGAGGTATGTGCAAGAGCGGATGTGTT TGTTGGCAATAGTTTCTCGACATTTTCCAACCTTGTAGTGTTGTCCAGAACAGAAAGGCT ATATAAATTAGGGAAGGCAAGCTCATGTGGTGAGGATGTTGGGCTGTCGTCCTATGCATA CAATGTCATCGGAGATGATGGTGGGCCACAGAAATGGATGACAGATATGTTGGACACAAG TCTTCAGCGCATAAGTTATGGAACGAATAACATCTCCTGCCACTGATCTTTTAACACACT AGCATCTGACCGAAATACAACCGTGGACAGGAAGATAGTTTTTATGGCTGAATCTTGTCA AGAGACGAGCAGGTGCAGCAGCTCGACGGTACTTTCCATGTTAGAATCTAGACAAGTCGA TCTGGCATGTCACACTTCTGAAATGACTTTGGCCAAGAATTCCTTGTGTGTTCTGTGAGT GTGTACAAAAGTTGTTTCCTGAGCAGCATTGTGCTGAACAGTTTTTAGTTTGCAGAGCTA AACGTTATGTCATGCATTGTTTGCATTCTGTGGTTCACTGGGAGGAGCTTGATTCACACT GTTGAGAATCTGACGCTGTCACTTTCACATGAAACATTTGTATCAAGTGTATTCGTTCGT TTATGCTGTTAAAACTCTTGATTCTGTAGCACCTTGTAATTTCCTTGAGAAAGATACTTT GGATATGTTCCTTCTCAACAAAATGCTCAGTTGGTGTAATCACAGTCACCATATATCGAC ATCTGTGCAACGAAAGAGGTTTTGATGTGGGAAGTTCGAAGCTCATGGGATTAACAACAG CTTAAGAAGGAACAAAGGGGACGACGATTTCTGCGCAGACAGCTGATTCGTCCAAAATAG CTACAGGTGGTATACGTTTTTAATATATAAATATAAAATAACATTCATTGGTTCAGTCAA GATAACATATGTCCTTGGTGGTAATTTCTTTATGAATCAACCAAGGCTTGGACCATGGCA TGTTTGGAATGTGTAGTCTGCCTGCACGTCTGAAAACGTTTTGATGAGCCCAGATGAATG AAACATTGCTATTTGGCTAAAAAAATACATTTATTTGTTGCTTCCAACTGTCTTTCTGGA CCTGGAGAAGCTAGTTGCAGAAGATTGTGACATTGTTCAGAAATTCCGAGTAAACCACCT GCTATCGGAATACTAGCAGGGGCTAGTTTTGTTATGTTCTGATGAAAAATGGGCATAAAG TTCAGAGAACATACGCAATGGTTAGGTTTTTTTTATTG
Protein Sequence (441 aa)
>BART1_0-u58660.002 441 150831_barley_pseudomolecules MNILLDLKHLKHISLPARLIICKCLLIVIGLIVLRAIISPFLAISLSEKSFYESPTLDLF PGVRKGKFVEVPQIIWGLNNQKIAFARACLTARFLNRSLLMPSLSASLFYKEVDLLQPIA FDKVFDLNKFNAHCHGFVRVARYSEVSNRTEPFKLQKGSGRRWTVERDLDQLQQSRLGEA DGFEVIHVTGKHPFLWPDHWPVKDYARIFDCLAVAPEIETEVVRVVSKIKDAGKKARHDA AISHNKKRIDSLTNLPVQYIAVHMRIEKDWMIHCKKWEQRSNLKEICSSKGEIIHKVSQI TDLRRPLVVYLAVADSLLEDDSVTSGWRVGMVAYEKKKLGVTDIYDRQPYLIKSAIDFEV CARADVFVGNSFSTFSNLVVLSRTERLYKLGKASSCGEDVGLSSYAYNVIGDDGGPQKWM TDMLDTSLQRISYGTNNISCH