- Gene BART1_0-u58660
- Gene IDBART1_0-u58660
- Location chrUn: 84395457 - 84399237
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU0Hr1G015560 | 83.6 | + | + | 3161 | -620 | Containing |
Transcripts from Gene BART1_0-u58660
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u58660.001 | 3150 | 3150 bp MSTRG.58660.1 MSTRG.58660 |
BART1_0-u58660.002 | 3158 | 3158 bp MSTRG.58660.2 MSTRG.58660 |
Exon Structure of BART1_0-u58660
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g07200.2 | +2 | 0.0 | 774 | 364/442 (82%) | protein|protein-O-fucosyltransferase 1, putative, expressed |
TAIR PP10 | AT3G05320 @ ARAPORT AT3G05320.1 @ TAIR |
+2 | 3e-160 | 480 | 255/456 (56%) | Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445 |
BRACH PP3 | Bradi3g05130.3.p | +2 | 0.0 | 838 | 395/442 (89%) | pacid=32821848 transcript=Bradi3g05130.3 locus=Bradi3g05130 ID=Bradi3g05130.3.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0090305 | nucleic acid phosphodiester bond hydrolysis |
GO:0016757 | transferase activity, transferring glycosyl groups |
GO:0140096 | catalytic activity, acting on a protein |
GO:0016825 | hydrolase activity, acting on acid phosphorus-nitrogen bonds |
GO:0004527 | exonuclease activity |
GO:0036066 | protein O-linked fucosylation |
GO:0006508 | proteolysis |
GO:0016021 | integral component of membrane |
GO:0009856 | pollination |
GO:0006004 | fucose metabolic process |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons