Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU0Hr1G01556083.6++3161-620Containing




Transcripts from Gene BART1_0-u58660

TranscriptLength(bp)Description
BART1_0-u58660.00131503150 bp MSTRG.58660.1 MSTRG.58660
BART1_0-u58660.00231583158 bp MSTRG.58660.2 MSTRG.58660



Exon Structure of BART1_0-u58660


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g07200.2 +2 0.0 774 364/442 (82%) protein|protein-O-fucosyltransferase 1, putative, expressed
TAIR PP10 AT3G05320 @ ARAPORT
AT3G05320.1 @ TAIR
+2 3e-160 480 255/456 (56%) Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445
BRACH PP3 Bradi3g05130.3.p +2 0.0 838 395/442 (89%) pacid=32821848 transcript=Bradi3g05130.3 locus=Bradi3g05130 ID=Bradi3g05130.3.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0090305nucleic acid phosphodiester bond hydrolysis
GO:0016757transferase activity, transferring glycosyl groups
GO:0140096catalytic activity, acting on a protein
GO:0016825hydrolase activity, acting on acid phosphorus-nitrogen bonds
GO:0004527exonuclease activity
GO:0036066protein O-linked fucosylation
GO:0006508proteolysis
GO:0016021integral component of membrane
GO:0009856pollination
GO:0006004fucose metabolic process



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons