- Transcript BART1_0-u58660.001
- Transcript IDBART1_0-u58660.001
- Gene IDBART1_0-u58660
Barley RTD
Exon Structure of BART1_0-u58660.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 84396045 | 84395457 | + |
| chrUn | 2 | 84399237 | 84396677 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 9.24379 | 9.9883 | 12.6042 |
| morex | ETI | 6.14455 | 5.20283 | 5.41048 |
| morex | LEA | 7.43342 | 8.14568 | 8.08303 |
| morex | EPI | 3.48891 | 4.02131 | 3.77605 |
| morex | ROO | 4.58371 | 8.55997 | 3.18919 |
| morex | ROO2 | 6.51775 | 9.5033 | 10.0886 |
| morex | NOD | 15.3596 | 13.8873 | 7.51253 |
| morex | RAC | 6.87277 | 9.24454 | 7.40331 |
| morex | INF1 | 13.8042 | 11.2764 | 11.3536 |
| morex | INF2 | 12.4022 | 12.9579 | 12.8832 |
| morex | CAR5 | 10.4025 | 9.26056 | 13.4706 |
| morex | CAR15 | 4.80462 | 5.41747 | 3.25955 |
| morex | LEM | 9.89152 | 8.2638 | 7.96422 |
| morex | LOD | 14.6065 | 10.7767 | 7.09611 |
| morex | PAL | 8.332 | 7.06305 | 9.64449 |
| morex | SEN | 3.64728 | 6.22816 | 5.63504 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g07200.2 | +3 | 0.0 | 774 | 364/442 (82%) | protein|protein-O-fucosyltransferase 1, putative, expressed |
| TAIR PP10 | AT3G05320 @ ARAPORT AT3G05320.1 @ TAIR |
+3 | 3e-160 | 480 | 255/456 (56%) | Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445 |
| BRACH PP3 | Bradi3g05130.3.p | +3 | 0.0 | 838 | 395/442 (89%) | pacid=32821848 transcript=Bradi3g05130.3 locus=Bradi3g05130 ID=Bradi3g05130.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3150 bp)
>BART1_0-u58660.001 3150 150831_barley_pseudomolecules GTTGAAAGAAAACAGAGGGGATTCGGCTAAGCAAACCCCTCTTATCAAATGGACGTCCGA GTTTTTGTGGGGTTTCTGATTTTTCTGGGGATTTTTCTCTCGAAACCTCGTGAATCCCCA TGCCAAAGGAGGCCTGAAGGCAAGGAAATCCCCTTCCACTGGCAAGCTGGGCCCAAGAGT GATAGCACGCGCACGCGCTCCCTTGACCTACCGGCATCGTGTTTTTCCCCTTCCCGAATT TCTCTCCCCCCTTCCCATTTCCGGTGGTGATCTGCCTCCGACGACCGGAACCACGTCAAG CGTTTGACGCTCTCATCTTCTACCCTCTACGCTAGATCGAATCACTCTTTCTACCTGGAT CAGGCCTCACGGAGTAGCGGAGGAGGAGGAACGGCGGGGCCTTGGAGAGAGGGCTGGGCG CTTCCGACGGCGGCGGAGACAGAGCCGTGCCTGCCGGCTGCAGAGACGATTGGGCGTGGA GGTGAGGCGTAGACCTGGCCCATTCTAGGTCCGGCCGAGGGCAGCAATTTGGGGGACAGC AGCGCACAGTTGCAGAGTTTCGGTGAACACAAGTGATTCAAAAGACCAATCTTGTGGAGC ATACGCTAAATTGTCAGCAGAAGGGTCAAAGCCTATGATTGTAACAGCATGAACCGAGCT GGAAACCTGATTTACTCATTGCCCAGGAAGAACTGGTGAAGCCATCCAAGCGTATTTGGT TATTGATTCCATTATATTGCAGCACAGTATGTACTTCCGCTGGGCGATAAAGTTGACCTG GTAGAATGAGAAGGAATTAAAGAACTGTTTCAATGAACATCCTACTAGACCTTAAGCATC TCAAGCACATTAGCTTGCCGGCGAGGCTTATTATTTGCAAGTGCCTTCTCATAGTGATTG GCCTTATTGTATTGAGAGCAATTATCTCCCCTTTTCTTGCCATTAGCTTGTCTGAGAAGA GTTTTTATGAGTCACCAACCCTTGACTTGTTCCCTGGAGTTAGGAAAGGCAAGTTTGTTG AGGTCCCACAGATTATATGGGGATTGAACAATCAGAAGATTGCATTTGCCAGAGCATGCT TGACGGCAAGATTCCTGAACCGTTCTCTACTCATGCCAAGTCTGAGTGCTTCGCTTTTCT ACAAAGAGGTTGACTTGCTGCAGCCTATTGCTTTCGACAAGGTATTTGACCTTAATAAGT TCAATGCCCATTGTCATGGGTTTGTAAGGGTAGCTCGGTATTCAGAAGTTTCGAATCGTA CCGAGCCTTTCAAACTTCAAAAGGGCAGTGGTAGGAGGTGGACAGTGGAGAGAGACTTGG ATCAACTGCAGCAATCCAGATTGGGGGAGGCCGATGGCTTTGAAGTGATTCATGTCACTG GGAAGCATCCATTTCTATGGCCTGACCATTGGCCAGTGAAAGACTATGCCAGGATCTTCG ATTGCCTTGCTGTAGCTCCTGAGATAGAAACTGAAGTTGTCAGGGTCGTATCGAAGATTA AAGATGCAGGGAAAAAAGCAAGGCATGATGCTGCCATTTCTCATAATAAGAAGAGGATAG ATAGTTTGACAAATCTTCCTGTGCAGTACATTGCTGTTCACATGAGAATAGAGAAAGATT GGATGATCCATTGCAAGAAGTGGGAGCAGCGGTCCAATTTAAAGGAAATCTGTAGCAGCA AAGGAGAGATCATTCATAAGGTCTCACAGATCACTGACCTACGTCGCCCGCTTGTAGTTT ATCTTGCAGTAGCTGACAGCCTTCTAGAAGACGATTCAGTAACCAGTGGTTGGAGAGTTG GTATGGTTGCTTATGAGAAGAAGAAACTTGGAGTTACTGACATATATGATAGGCAGCCTT ACCTTATAAAGTCTGCCATTGACTTTGAGGTATGTGCAAGAGCGGATGTGTTTGTTGGCA ATAGTTTCTCGACATTTTCCAACCTTGTAGTGTTGTCCAGAACAGAAAGGCTATATAAAT TAGGGAAGGCAAGCTCATGTGGTGAGGATGTTGGGCTGTCGTCCTATGCATACAATGTCA TCGGAGATGATGGTGGGCCACAGAAATGGATGACAGATATGTTGGACACAAGTCTTCAGC GCATAAGTTATGGAACGAATAACATCTCCTGCCACTGATCTTTTAACACACTAGCATCTG ACCGAAATACAACCGTGGACAGGAAGATAGTTTTTATGGCTGAATCTTGTCAAGAGACGA GCAGGTGCAGCAGCTCGACGGTACTTTCCATGTTAGAATCTAGACAAGTCGATCTGGCAT GTCACACTTCTGAAATGACTTTGGCCAAGAATTCCTTGTGTGTTCTGTGAGTGTGTACAA AAGTTGTTTCCTGAGCAGCATTGTGCTGAACAGTTTTTAGTTTGCAGAGCTAAACGTTAT GTCATGCATTGTTTGCATTCTGTGGTTCACTGGGAGGAGCTTGATTCACACTGTTGAGAA TCTGACGCTGTCACTTTCACATGAAACATTTGTATCAAGTGTATTCGTTCGTTTATGCTG TTAAAACTCTTGATTCTGTAGCACCTTGTAATTTCCTTGAGAAAGATACTTTGGATATGT TCCTTCTCAACAAAATGCTCAGTTGGTGTAATCACAGTCACCATATATCGACATCTGTGC AACGAAAGAGGTTTTGATGTGGGAAGTTCGAAGCTCATGGGATTAACAACAGCTTAAGAA GGAACAAAGGGGACGACGATTTCTGCGCAGACAGCTGATTCGTCCAAAATAGCTACAGGT GGTATACGTTTTTAATATATAAATATAAAATAACATTCATTGGTTCAGTCAAGATAACAT ATGTCCTTGGTGGTAATTTCTTTATGAATCAACCAAGGCTTGGACCATGGCATGTTTGGA ATGTGTAGTCTGCCTGCACGTCTGAAAACGTTTTGATGAGCCCAGATGAATGAAACATTG CTATTTGGCTAAAAAAATACATTTATTTGTTGCTTCCAACTGTCTTTCTGGACCTGGAGA AGCTAGTTGCAGAAGATTGTGACATTGTTCAGAAATTCCGAGTAAACCACCTGCTATCGG AATACTAGCAGGGGCTAGTTTTGTTATGTTCTGATGAAAAATGGGCATAAAGTTCAGAGA ACATACGCAATGGTTAGGTTTTTTTTATTG
Protein Sequence (441 aa)
>BART1_0-u58660.001 441 150831_barley_pseudomolecules MNILLDLKHLKHISLPARLIICKCLLIVIGLIVLRAIISPFLAISLSEKSFYESPTLDLF PGVRKGKFVEVPQIIWGLNNQKIAFARACLTARFLNRSLLMPSLSASLFYKEVDLLQPIA FDKVFDLNKFNAHCHGFVRVARYSEVSNRTEPFKLQKGSGRRWTVERDLDQLQQSRLGEA DGFEVIHVTGKHPFLWPDHWPVKDYARIFDCLAVAPEIETEVVRVVSKIKDAGKKARHDA AISHNKKRIDSLTNLPVQYIAVHMRIEKDWMIHCKKWEQRSNLKEICSSKGEIIHKVSQI TDLRRPLVVYLAVADSLLEDDSVTSGWRVGMVAYEKKKLGVTDIYDRQPYLIKSAIDFEV CARADVFVGNSFSTFSNLVVLSRTERLYKLGKASSCGEDVGLSSYAYNVIGDDGGPQKWM TDMLDTSLQRISYGTNNISCH