- Transcript BART1_0-u57237.009
- Transcript IDBART1_0-u57237.009
- Gene IDBART1_0-u57237
Barley RTD
Exon Structure of BART1_0-u57237.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255658 | 653254061 | - |
| chr7H | 2 | 653255899 | 653255838 | - |
| chr7H | 3 | 653256103 | 653255992 | - |
| chr7H | 4 | 653257577 | 653256237 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.5078 | 1.45811 | 0.61981 |
| morex | ETI | 3.34164 | 8.14459 | 1.37407 |
| morex | LEA | 5.94071 | 3.91411 | 9.13972 |
| morex | EPI | 3.02275 | 5.07825 | 3.1596 |
| morex | ROO | 0.865617 | 2.30904 | 1.61842 |
| morex | ROO2 | 4.13082 | 4.66955 | 2.18204 |
| morex | NOD | 3.99379 | 5.53635 | 6.45147 |
| morex | RAC | 0.134688 | 0.0000000217075 | 0 |
| morex | INF1 | 0.341607 | 2.43484 | 1.77877 |
| morex | INF2 | 2.95001 | 0.864074 | 1.7922 |
| morex | CAR5 | 0 | 0.132272 | 0 |
| morex | CAR15 | 0.148385 | 0.0777733 | 0.000835301 |
| morex | LEM | 2.29112 | 3.98087 | 0.878931 |
| morex | LOD | 0 | 0 | 2.92693 |
| morex | PAL | 0.98182 | 0.132202 | 0.894502 |
| morex | SEN | 11.5086 | 9.65219 | 10.3287 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +1 | 6e-94 | 187 | 138/179 (77%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT5G37260 @ ARAPORT AT5G37260.1 @ TAIR |
+1 | 8e-33 | 129 | 76/135 (56%) | Symbols: RVE2, CIR1 | Homeodomain-like superfamily protein | chr5:14751344-14752972 REVERSE LENGTH=287 |
| BRACH PP3 | Bradi1g29680.1.p | +3 | 2e-121 | 229 | 135/277 (49%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3113 bp)
>BART1_0-u57237.009 3113 150831_barley_pseudomolecules GCTCCACCCCACCTTCCTCCTCCTCCTCCGCCTCCGCTTCCTCCTCCTCCGTCTCCCCCG GCAGCACGTGCGCGCCCCGGCGGCCTCCTCTCTTAGCTGCGCCGCTCGCCGGAGCGTCTC TTCTCGTTTGGCTTCTTTTCTTTGGGTCAGTTTCCTTGGGCCACGGTGTCTCGCCGGCCG GCTCCGGTCGCCGAGAGGGAGGGTGTTTTTTCGGTGCTTCCTGGGCGATCCCGGCGAGAG ACGCTTCTGTCCCAGCCTCCGCCGCAGGCCGCCCGCTTCTGTCCCCGCCTTTGCCGCCCG CCGTCTGCTTCTGTCCCCGCCTTCGCCGTCCGCCGTCTGCCGTCTGCTTCGTTCGATCTC GGTGACGGGGACGCCGAGATTCGGACCTCCGCCGGGGAACGGCTCATGGCTTCCATGGCG CTCGCGGAGGTAAAGATCCCTCCTTTTTTTTCTTCTCCGCGCGCGTTCCCTGGCCGTTCC TCGCCTGCTGCAAAATTTTACTTGCGCAGTAAAAAACATTTTTCCTGGGAGGGATTTTAC CTTGTATATTTCTGTTCTTGATGGCTTCTCCGTTGGATAATTTGCCAAAATGAGTTTTTT ATTTATGTATTTACTTCTGCATCTACCACCAGTAGTCTCTAGTTTTTTTTTTTTCAACAT TTTTGGAGGGATTTTTATCTTGCGAGAAATGGCCTGTTTCTAGACACTTCTGTTTTGGGA GGATACAGACCACACCACCACAATATCTTTAGAGGCTTCGAGAGCTAGAAATGGGGAGGA CACAACTTACATACATATTTCATACCAAACATGAGAGCTAGAGATGGGGATTATTTTAGT TAGAGCCACCTACCAAACATGCCAGGAGGCCTGATTGCCAAATCCAGAAACACTTTATGG TGCTTTCCATCCTAGGTAAAATTCTTTTACAGTGTTGAATGATAATACTACTACTAGTAG TCACAGTCTCCGTTTAATTCATGAATGGTTTGTTGAGGATCATTCAGCATAGCTCACTTT TGTTACCAATACTCCATTAGCAATTCTGATGTTGATCCTGCTTAATCAGTAACATACTAT GTAGTTTTAGCTCAAACTATGCTGCAATGTTCACTTCACCCTTATGGTCAGATTTCACAT TACTTTGACCTGCTAGACAATTACTACGACTGGTCTGTGGAACTGTTTGCAGCCATCACC AGCAGTGTGTTCTGAGTCCTGACTGATATTGTTTCCTCTGTTCTTGTCTCCAGGAAACGG ATGCACTGGATTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGCAATGC AACCCAATGAGGAGGGGATGGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAG TGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGG CGTCAGATACAAGAACACATTGGCACAAAGACCGCTGTCCAAATCCGAAGCCATGCCCAG AAGTTTTTCTCCAAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCGAGATCCCTCCC CCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGGACTCCTGCAAC GGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATCATCTTCTGGTTCT GACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGGATGCTTTTGGA TCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAGATGAGGAGAAT AATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAAATCAATCCCAC AAGGTAAAGAACCATCATTCAACCCAGTTAGCTGTACTGCTGAATAGGCTCTATGAATGA CGTGTTGTACTTACCAGACTGCTCATGTTCCTTGCTTCCTTTTGCAGGAGGCTGATCAGG AAAACAAAGATACGGGTACCTCCGAAGAGGATTCTTCTGATGAGGTGCAGGTAACAAGCG TGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACCCGAGGAAAAGGTGCTCCCCGGATC CAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCACATTCCTCTAACAAAGGAACATCAC AAGCCCCACTGGCTGTAGAGATTCCAACACATACAAAGGGAGAACAAATCTCACAATCCT CTAACAAGGCAACATCACAAGCCCCATTGGCTGTAGAGGTTCCGACGTATACAAAGGGAG AGCAAATCTCACAATTCTCTAACAAGGCAACTTCACAAGCCCCACTGGCTGTAGAAATTC CAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCGTACAATTCGTTCCCTCTACATT TTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTACACATGTGGTGGCCATACTATGGGT TCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCGCACAACGAAGCTACTGATGAGA GCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCGAAGAGCCTTCCTGTTGAATCAA GCTCGGACTCCGATGACAATGCTGAGACAACAGCCAACAAGGAGTGGAAAGTGCTCGAGT CGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAAGTTTTCAGCTAAAACCAAGCGAGA ACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCAGCGGAGAAGAGCCGGCGAGGGGGT TTGTGCCATACAAAAGATGTAGAGTTGAATGACGAAACCGGGGATCTTCTTCCCCGTGTC TAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCACATATTCCTTTGCTCCGGTGTATT CTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGTCTGGCCCAGGAAATGCACGTTGTT TCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTGGTTGTTGTAAGTGCTGTAGGATAA AAGCAGGAGGTTTTGTAGGGATGCCAATTCTCTGTCTGTCTCATGTTGTTGATGTAAAAG CAAAGAATTTTTGTGTCACCATTGTTGATTCTTAATGGAAATCGACTTCTCTG
Protein Sequence (291 aa)
>BART1_0-u57237.009 291 150831_barley_pseudomolecules MTCCTYQTAHVPCFLLQEADQENKDTGTSEEDSSDEVQVTSVKLFGKTVVIPDPRKRCSP DPGSGHENGGQTSHSSNKGTSQAPLAVEIPTHTKGEQISQSSNKATSQAPLAVEVPTYTK GEQISQFSNKATSQAPLAVEIPAFAAPPSGWVLPYNSFPLHFGESAEARITPLHMWWPYY GFPISHPGGLSVVPHNEATDESEAAKSPLVESSSKSLPVESSSDSDDNAETTANKEWKVL ESLGTAQVPRSASSFQLKPSENSAFVRVKPIIGSGEEPARGFVPYKRCRVE