- Transcript BART1_0-u57237.008
- Transcript IDBART1_0-u57237.008
- Gene IDBART1_0-u57237
Barley RTD
Exon Structure of BART1_0-u57237.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653254058 | - |
| chr7H | 2 | 653255658 | 653255311 | - |
| chr7H | 3 | 653256103 | 653255992 | - |
| chr7H | 4 | 653256324 | 653256237 | - |
| chr7H | 5 | 653257065 | 653256663 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.57657 | 1.45228 | 1.29499 |
| morex | ETI | 11.7604 | 19.6412 | 4.87492 |
| morex | LEA | 2.52929 | 4.50642 | 22.0386 |
| morex | EPI | 8.41647 | 9.71458 | 8.68011 |
| morex | ROO | 10.5623 | 4.11241 | 1.10673 |
| morex | ROO2 | 4.98756 | 7.48346 | 3.83825 |
| morex | NOD | 2.81337 | 19.8756 | 33.4101 |
| morex | RAC | 0.0356965 | 0.0148488 | 0 |
| morex | INF1 | 0.97531 | 1.1301 | 1.15178 |
| morex | INF2 | 4.18222 | 1.74571 | 2.66865 |
| morex | CAR5 | 0.47463 | 0 | 0.0919577 |
| morex | CAR15 | 0.0897695 | 0 | 0 |
| morex | LEM | 7.88543 | 9.36539 | 3.4175 |
| morex | LOD | 0 | 0.182393 | 3.22069 |
| morex | PAL | 1.43381 | 3.04455 | 1.97232 |
| morex | SEN | 30.8761 | 34.7159 | 29.5174 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +1 | 3e-80 | 243 | 211/403 (52%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.3.p | +1 | 9e-116 | 352 | 238/404 (59%) | pacid=32806209 transcript=Bradi1g29680.3 locus=Bradi1g29680 ID=Bradi1g29680.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2100 bp)
>BART1_0-u57237.008 2100 150831_barley_pseudomolecules AAAACATTTTTCCTGGGAGGGATTTTACCTTGTATATTTCTGTTCTTGATGGCTTCTCCG TTGGATAATTTGCCAAAATGAGTTTTTTATTTATGTATTTACTTCTGCATCTACCACCAG TAGTCTCTAGTTTTTTTTTTTTCAACATTTTTGGAGGGATTTTTATCTTGCGAGAAATGG CCTGTTTCTAGACACTTCTGTTTTGGGAGGATACAGACCACACCACCACAATATCTTTAG AGGCTTCGAGAGCTAGAAATGGGGAGGACACAACTTACATACATATTTCATACCAAACAT GAGAGCTAGAGATGGGGATTATTTTAGTTAGAGCCACCTACCAAACATGCCAGGAGGCCT GATTGCCAAATCCAGAAACACTTTATGGTGCTTTCCATCCTAGGAAACGGATGCACTGGA TTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGCAATGCAACCCAATGA GGAGGGGATGGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAGTGGACGGACG AAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGGCGTCAGATAC AAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCGAGATCCCTCCCCCTAGGCCAAAG AGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGGACTCCTGCAACGGGGCAAACCCA GCAAATGGACCATCCAAGCTTGCTCAAATTTCATCATCTTCTGGTTCTGACCAAGAGAAT GGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGGATGCTTTTGGATCATCGATGTCA AACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAGATGAGGAGAATAATGTTCCTCCA ATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAAATCAATCCCACAAGGAGGCTGAT CAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATTCTTCTGATGAGGTGCAGGTAACA AGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACCCGAGGAAAAGGTGCTCCCCG GATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCACATTCCTCTAACAAAGGAACA TCACAAGCCCCACTGGCTGTAGAGATTCCAACACATACAAAGGGAGAACAAATCTCACAA TCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTGTAGAGGTTCCGACGTATACAAAG GGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTTCACAAGCCCCACTGGCTGTAGAA ATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTCCGTACAATTCGTTCCCTCTA CATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTACACATGTGGTGGCCATACTAT GGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGCCGCACAACGAAGCTACTGAT GAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCTCGAAGAGCCTTCCTGTTGAA TCAAGCTCGGACTCCGATGACAATGCTGAGACAACAGCCAACAAGGAGTGGAAAGTGCTC GAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAAGTTTTCAGCTAAAACCAAGC GAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCAGCGGAGAAGAGCCGGCGAGG GGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGACGAAACCGGGGATCTTCTTCCCCG TGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCACATATTCCTTTGCTCCGGTG TATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGTCTGGCCCAGGAAATGCACGT TGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTGGTTGTTGTAAGTGCTGTAGG ATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCTCTGTCTGTCTCATGTTGTTGATGTA AAAGCAAAGAATTTTTGTGTCACCATTGTTGATTCTTAATGGAAATCGACTTCTCTGAAT
Protein Sequence (399 aa)
>BART1_0-u57237.008 399 150831_barley_pseudomolecules MAGPGVRYKVVREPGAKIEIEIPPPRPKRKPLHPYPRKRADSCNGANPANGPSKLAQISS SSGSDQENGSPVSVLSAMQSDAFGSSMSNPSSRSTSPESSDEENNVPPMVSREEGQQTGI NQSHKEADQENKDTGTSEEDSSDEVQVTSVKLFGKTVVIPDPRKRCSPDPGSGHENGGQT SHSSNKGTSQAPLAVEIPTHTKGEQISQSSNKATSQAPLAVEVPTYTKGEQISQFSNKAT SQAPLAVEIPAFAAPPSGWVLPYNSFPLHFGESAEARITPLHMWWPYYGFPISHPGGLSV VPHNEATDESEAAKSPLVESSSKSLPVESSSDSDDNAETTANKEWKVLESLGTAQVPRSA SSFQLKPSENSAFVRVKPIIGSGEEPARGFVPYKRCRVE