- Transcript BART1_0-u57237.007
- Transcript IDBART1_0-u57237.007
- Gene IDBART1_0-u57237
Barley RTD
Exon Structure of BART1_0-u57237.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653254002 | - |
| chr7H | 2 | 653255658 | 653255311 | - |
| chr7H | 3 | 653256103 | 653255838 | - |
| chr7H | 4 | 653256324 | 653256237 | - |
| chr7H | 5 | 653257542 | 653257149 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.05266 | 0.547939 | 0.385048 |
| morex | ETI | 8.61402 | 13.9689 | 3.53147 |
| morex | LEA | 3.11546 | 6.36712 | 6.52901 |
| morex | EPI | 7.09167 | 6.34317 | 6.21848 |
| morex | ROO | 3.99753 | 3.14481 | 0 |
| morex | ROO2 | 5.93004 | 7.68003 | 5.99113 |
| morex | NOD | 4.67913 | 8.44993 | 23.4647 |
| morex | RAC | 0.00000748655 | 0.343713 | 0.279034 |
| morex | INF1 | 0.983385 | 1.0106 | 0.640311 |
| morex | INF2 | 3.09625 | 1.72904 | 3.16744 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0.0745245 | 0.0595551 | 0.0757854 |
| morex | LEM | 3.01266 | 5.52949 | 2.32019 |
| morex | LOD | 0.342355 | 0.00906696 | 2.48065 |
| morex | PAL | 1.37718 | 0.452169 | 1.48818 |
| morex | SEN | 18.934 | 20.7368 | 12.7831 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +2 | 3e-93 | 286 | 232/423 (55%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.1.p | +2 | 2e-131 | 398 | 286/532 (54%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2301 bp)
>BART1_0-u57237.007 2301 150831_barley_pseudomolecules GCTTCCTCCTCCTCCGTCTCCCCCGGCAGCACGTGCGCGCCCCGGCGGCCTCCTCTCTTA GCTGCGCCGCTCGCCGGAGCGTCTCTTCTCGTTTGGCTTCTTTTCTTTGGGTCAGTTTCC TTGGGCCACGGTGTCTCGCCGGCCGGCTCCGGTCGCCGAGAGGGAGGGTGTTTTTTCGGT GCTTCCTGGGCGATCCCGGCGAGAGACGCTTCTGTCCCAGCCTCCGCCGCAGGCCGCCCG CTTCTGTCCCCGCCTTTGCCGCCCGCCGTCTGCTTCTGTCCCCGCCTTCGCCGTCCGCCG TCTGCCGTCTGCTTCGTTCGATCTCGGTGACGGGGACGCCGAGATTCGGACCTCCGCCGG GGAACGGCTCATGGCTTCCATGGCGCTCGCGGAGGAAACGGATGCACTGGATTCATCCAG ATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGCAATGCAACCCAATGAGGAGGGGAT GGCCTAGGAAGCCATACACGATCACAAAGCAGCGGGAGAAGTGGACGGACGAAGAGCACG AGAAGTTCCTGGAGGCGCTGAAGCTGTATGGCCGGTCCTGGCGTCAGATACAAGGTGTGT GCAGCCTTTATGAGTATAGCGCATCTCGTATAAGAATTTAAAGTAGTTGAAATAGCGATT CTGATTCATTCGGAACTGTTCTTTAGAACACATTGGCACAAAGACCGCTGTCCAAATCCG AAGCCATGCCCAGAAGTTTTTCTCCAAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGAT CGAGATCCCTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGC GGACTCCTGCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATC ATCTTCTGGTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTC GGATGCTTTTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTC AGATGAGGAGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGAT AAATCAATCCCACAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGA TTCTTCTGATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCC AGACCCGAGGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAAC CTCACATTCCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACA TACAAAGGGAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGC TGTAGAGGTTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAAC TTCACAAGCCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGT TCTTCCGTACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCC TTTACACATGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGT AGTGCCGCACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATC AAGCTCGAAGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAAC AGCCAACAAGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGC TTCAAGTTTTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCAT AGGCAGCGGAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATG ACGAAACCGGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTG TTCCACATATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCG GTGGTCTGGCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCAC AGGTGGTTGTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCT CTGTCTGTCTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCATTGTTGATTC TTAATGGAAATCGACTTCTCTGAATGAATGAAGCTGGCATGTTTGGTTGTTGCGGGCTGT TGTGTTGGTAAGAGTCTGAAG
Protein Sequence (322 aa)
>BART1_0-u57237.007 322 150831_barley_pseudomolecules MQSDAFGSSMSNPSSRSTSPESSDEENNVPPMVSREEGQQTGINQSHKEADQENKDTGTS EEDSSDEVQVTSVKLFGKTVVIPDPRKRCSPDPGSGHENGGQTSHSSNKGTSQAPLAVEI PTHTKGEQISQSSNKATSQAPLAVEVPTYTKGEQISQFSNKATSQAPLAVEIPAFAAPPS GWVLPYNSFPLHFGESAEARITPLHMWWPYYGFPISHPGGLSVVPHNEATDESEAAKSPL VESSSKSLPVESSSDSDDNAETTANKEWKVLESLGTAQVPRSASSFQLKPSENSAFVRVK PIIGSGEEPARGFVPYKRCRVE