- Transcript BART1_0-u57237.004
- Transcript IDBART1_0-u57237.004
- Gene IDBART1_0-u57237
Barley RTD
Exon Structure of BART1_0-u57237.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653255206 | 653252776 | - |
| chr7H | 2 | 653255658 | 653255311 | - |
| chr7H | 3 | 653256103 | 653255992 | - |
| chr7H | 4 | 653256324 | 653256220 | - |
| chr7H | 5 | 653259048 | 653256663 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0.13209 |
| morex | ETI | 1.27997 | 0.719874 | 0.161969 |
| morex | LEA | 0.268343 | 0.575563 | 0.964679 |
| morex | EPI | 0.315868 | 0.114019 | 0.224237 |
| morex | ROO | 0 | 0 | 0.12976 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 1.04026 | 0.321326 | 0.817351 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0.380344 | 0 | 0.145506 |
| morex | INF2 | 0.895357 | 0.795188 | 0 |
| morex | CAR5 | 0 | 0 | 0.065986 |
| morex | CAR15 | 0.082422 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0.0910404 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 2.13288 | 2.68292 | 1.55892 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +3 | 3e-86 | 243 | 211/403 (52%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.1.p | +3 | 2e-117 | 334 | 231/396 (58%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5382 bp)
>BART1_0-u57237.004 5382 150831_barley_pseudomolecules CTCGTGATATATGGTCAGTTAAAATAGCAGTTGTCCGTGCCTCTCCAATTGTGTTGATTT ATTATGTTACTCCTTTTGTGGGTGTAGAGTGAAGATTGTCCGTTAAATACTTACTAAGTC TCTCAAACATGAGGAAGCGACAAGAAAAAATGTGGAGAAGCTTCTCGTCACCATGCGATC AAAAATATGTAACATCACAACTCATATATATGTAGGAGTATCTGTCAATTAAATGGACAA TAAAATGTCTTAATTAATTTATGTGGCAGAAAAAGGAGGGCAGCCTAGATTTAGACAAGC CGAGATATGGAAAGGCCACTTGCAAGCCATGTGTCTTGGAGTTGCACTTATTCTAAAATT CACAACCGTCAGCACGATTTATCCAACCTCCCAATTCAACGATGTCGAGCAAGACGTATT GCTCTTAAATCTGTTTGGATGATTCCCCTTCTTTTCCAAAAATATACTCATGATATGTAT GGTTTATTTTGGGACCGGAGAAAATATGACATGCACATTACTAATTTTTGCAAAAATGAT TCCTTTTTTCTGGAGCGCATGGTTCCTATCCGAGACGTACGAAGTCTCTCCAATAAGATC ATGAAATTATCAAGCTAAATCCAGAAGAGATTCTTTTATTGGCCCCACACCAAGGGCTAA AAATGTAACATCGTCATTGATATCTACTCGACAATTATATTCATAGAAATGTGCTTCAAA AAATATGTGGACAAGACGAGAGGAACCTAGAGTTAGAGACACATTGAGAAAGGGAAAGGC CATTCATGGCATGATTACATAATTGGCCTTATCTAAAAGTTACGCGTGCTGTTATACTTT ATATATATCATATACCCTAGAAATATCTCCACGGGTTCGCTCCTGGCCTCTCATGTTCGA ATGGCTCTAGATACTCGTGGCTCTCTTCCGACTCGTTCCTCTCTCTTTGTTTCCACTTGT GCAAAACACCGAGACCCCCACGCGTTGTCACGTGGATTATTCTCGCGTACTACAATAACA ACCGTAATGCAACAACAATGTCCCATCAAATAAATTGTGTATGAGCCAACAAACCATAGG AAAACAATTCTCTGGTATTACAAACCGTATTACAAATCGCATCAGGATGATTACATATAA AATCGCACTCAAATCGTACCACATCATCGTTTCAAATTTACGTCGAAGAAAAACACAACT AGTGAAATAATGTAAACTTATTTTTGAGCTACTAGTAAGAAAATACACTTGTATATGGTG AGTAGATAAGGGAGAAAGCGCATCCAATGGGAAGCAAAGCCAGAAAAGGAAAGGGCGCGT CGGTCGCTGCATGTGGGCCCGGGGAGGCCGGGGCGTCCTCAGCCACGAGCTGGCCGGCGC TTCTGGAAATTTCATGGCTCCGACAGGTGGGACCCACACATGACGTGGCCACCCTCCCCG CCCCTCCTCGCGAAAATATATTTCCGTCGCTGCTCCACCCCACCTTCCTCCTCCTCCTCC GCCTCCGCTTCCTCCTCCTCCGTCTCCCCCGGCAGCACGTGCGCGCCCCGGCGGCCTCCT CTCTTAGCTGCGCCGCTCGCCGGAGCGTCTCTTCTCGTTTGGCTTCTTTTCTTTGGGTCA GTTTCCTTGGGCCACGGTGTCTCGCCGGCCGGCTCCGGTCGCCGAGAGGGAGGGTGTTTT TTCGGTGCTTCCTGGGCGATCCCGGCGAGAGACGCTTCTGTCCCAGCCTCCGCCGCAGGC CGCCCGCTTCTGTCCCCGCCTTTGCCGCCCGCCGTCTGCTTCTGTCCCCGCCTTCGCCGT CCGCCGTCTGCCGTCTGCTTCGTTCGATCTCGGTGACGGGGACGCCGAGATTCGGACCTC CGCCGGGGAACGGCTCATGGCTTCCATGGCGCTCGCGGAGGTAAAGATCCCTCCTTTTTT TTCTTCTCCGCGCGCGTTCCCTGGCCGTTCCTCGCCTGCTGCAAAATTTTACTTGCGCAG TAAAAAACATTTTTCCTGGGAGGGATTTTACCTTGTATATTTCTGTTCTTGATGGCTTCT CCGTTGGATAATTTGCCAAAATGAGTTTTTTATTTATGTATTTACTTCTGCATCTACCAC CAGTAGTCTCTAGTTTTTTTTTTTTCAACATTTTTGGAGGGATTTTTATCTTGCGAGAAA TGGCCTGTTTCTAGACACTTCTGTTTTGGGAGGATACAGACCACACCACCACAATATCTT TAGAGGCTTCGAGAGCTAGAAATGGGGAGGACACAACTTACATACATATTTCATACCAAA CATGAGAGCTAGAGATGGGGATTATTTTAGTTAGAGCCACCTACCAAACATGCCAGGAGG CCTGATTGCCAAATCCAGAAACACTTTATGGTGCTTTCCATCCTAGGAAACGGATGCACT GGATTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGCAATGCAACCCAA TGAGGAGGGGATGGGTGAGCATCCTGTCAAGCCTAGGAAGCCATACACGATCACAAAGCA GCGGGAGAAGTGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATGG CCGGTCCTGGCGTCAGATACAAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCGAGA TCCCTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGGACT CCTGCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATCATCTT CTGGTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGGATG CTTTTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAGATG AGGAGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAAATC AATCCCACAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATTCTT CTGATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAGACC CGAGGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCTCAC ATTCCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACATACAA AGGGAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTGTAG AGGTTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTTCAC AAGCCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTCTTC CGTACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTTTAC ACATGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAGTGC CGCACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAAGCT CGAAGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAACAGCCA ACAAGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTTCAA GTTTTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAGGCA GCGGAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGACGAA ACCGGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTTCCA CATATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGTGGT CTGGCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAGGTG GTTGTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCTCTGTC TGTCTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCATTGTTGATTCTTAAT GGAAATCGACTTCTCTGAATGAATGAAGCTGGCATGTTTGGTTGTTGCGGGCTGTTGTGT TGGTAAGAGTCTGAAGATGCTGGTGCCTTTTGTCCCGAGCATGCAGGCAGAGCTTGGCCG TGTTCTTCAGACTGGAGTATGGAAGGAAACATTGTTCATCATTGGTAGCAATTGCATGCC TTTGAAGGTTTCCAGCCATGGCTGCTAAATTCAATTCCATCAAGTGGGACATTATGATAT TTGTCTGAACATTGCAGTTGCCGAACATTCCAATGTTTGCCGCAACTGTTGGCTAGCAAT GTCTGACCATTCAATTCTGTCAAGCAAACAGCAGAGGCTGCTTAGTGACTGGGAATTGTA CGGGACATAAATCGTGAGTTACTGGGATAAACATTAAGGCTTGTTTTTTGTACTTGTATA TATCCAGAGGATGCAAATATCTCATGTGAAGAACCGAAATGGAAATGGATAGCTAAAGGA TCCATTGCGACAAAACGGGTAAATTTGTATCAGGAAGCAGAGAGTTGTTTTTAATGAGCT TGTCAACAGAAGCTTGATCCAGCTTGCTGATGTTAATGTTGACTATTATGATTTTAACAA CATTGTCAGGTTCAATCAGATGAAGCGAATTTTGCCACAGTTTAAAACCGTGCCTGCAAT CCTTTGCCAAACAAGATCCGTCGACTATCCCTGCAATCCTGTGGTTTGAACATAAATTGA CAATCCATGCCATCACAGGAAGCAAGTTACATATTCGCTCATGGAATGCCTTTGCACGTG TTTGACATATGTGCGGGTCATTCGTCACCCGAAACACAAACATGTAAGAAATATAAGAAG TTTTCTATCAACTGATGTATTTGAGAATTCAGAGTGAAGGAATCACATAGCTTCCTGAAG ATATTAGAAAGCTACAGAACTTAGAGACTCTTGATTTACGGGACAGTTCAGTTGGAAAAT TGCCATCAACCATAGCCCTCCGATGGCTATAAAATTTGGCGTGGCAAAGAAACGGGTATA AAAATTTGCAGCTGGTGCGACGCCACCACTCCGATGGCTCAACCTTTCCTGGAGTGCAGC TCAAGTTTGGTTGAGATATAGTGATGGGTCTGACATAGGCATCAAACATCTTGCAAGCCT TATGTACATCAAACTTTTTGTGATGATGCAACTCGGGAGGTTGTCTTGAAGATGAGAGGT TTAAGAGTTACGAGAGGGCAATGCGTAGGGAAGGAAGCAGGTGCGTATGTGCCTGCCCTG AAACCTATTTTCTTGTTCCATGCATAGACTTGTTGTTTCCCT
Protein Sequence (399 aa)
>BART1_0-u57237.004 399 150831_barley_pseudomolecules MAGPGVRYKVVREPGAKIEIEIPPPRPKRKPLHPYPRKRADSCNGANPANGPSKLAQISS SSGSDQENGSPVSVLSAMQSDAFGSSMSNPSSRSTSPESSDEENNVPPMVSREEGQQTGI NQSHKEADQENKDTGTSEEDSSDEVQVTSVKLFGKTVVIPDPRKRCSPDPGSGHENGGQT SHSSNKGTSQAPLAVEIPTHTKGEQISQSSNKATSQAPLAVEVPTYTKGEQISQFSNKAT SQAPLAVEIPAFAAPPSGWVLPYNSFPLHFGESAEARITPLHMWWPYYGFPISHPGGLSV VPHNEATDESEAAKSPLVESSSKSLPVESSSDSDDNAETTANKEWKVLESLGTAQVPRSA SSFQLKPSENSAFVRVKPIIGSGEEPARGFVPYKRCRVE