- Transcript BART1_0-u57237.002
- Transcript IDBART1_0-u57237.002
- Gene IDBART1_0-u57237
Barley RTD
Exon Structure of BART1_0-u57237.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653252718 | 653252303 | - |
| chr7H | 2 | 653255206 | 653252838 | - |
| chr7H | 3 | 653255658 | 653255311 | - |
| chr7H | 4 | 653256103 | 653255992 | - |
| chr7H | 5 | 653256324 | 653256220 | - |
| chr7H | 6 | 653257679 | 653257149 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.224689 | 0.141113 | 0.691076 |
| morex | ETI | 1.15591 | 2.32895 | 0.492547 |
| morex | LEA | 2.54774 | 2.38215 | 2.80035 |
| morex | EPI | 0.317943 | 0.553809 | 0.470458 |
| morex | ROO | 2.64452 | 1.54651 | 0.846003 |
| morex | ROO2 | 1.52783 | 0.682848 | 1.23717 |
| morex | NOD | 4.94869 | 2.18897 | 5.20592 |
| morex | RAC | 0.0776208 | 0.130831 | 0.0816721 |
| morex | INF1 | 0.511807 | 0.907254 | 0.719389 |
| morex | INF2 | 2.51763 | 0.574762 | 1.66811 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0.220842 | 0 |
| morex | LEM | 2.72727 | 3.88609 | 0.687591 |
| morex | LOD | 0.247951 | 0.0985077 | 0.691154 |
| morex | PAL | 0.438868 | 0 | 0.503842 |
| morex | SEN | 2.94362 | 0.757631 | 3.27185 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +2 | 2e-86 | 238 | 211/403 (52%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g29680.1.p | +2 | 8e-121 | 331 | 231/396 (58%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3881 bp)
>BART1_0-u57237.002 3881 150831_barley_pseudomolecules CTGGCCGGCGCTTCTGGAAATTTCATGGCTCCGACAGGTGGGACCCACACATGACGTGGC CACCCTCCCCGCCCCTCCTCGCGAAAATATATTTCCGTCGCTGCTCCACCCCACCTTCCT CCTCCTCCTCCGCCTCCGCTTCCTCCTCCTCCGTCTCCCCCGGCAGCACGTGCGCGCCCC GGCGGCCTCCTCTCTTAGCTGCGCCGCTCGCCGGAGCGTCTCTTCTCGTTTGGCTTCTTT TCTTTGGGTCAGTTTCCTTGGGCCACGGTGTCTCGCCGGCCGGCTCCGGTCGCCGAGAGG GAGGGTGTTTTTTCGGTGCTTCCTGGGCGATCCCGGCGAGAGACGCTTCTGTCCCAGCCT CCGCCGCAGGCCGCCCGCTTCTGTCCCCGCCTTTGCCGCCCGCCGTCTGCTTCTGTCCCC GCCTTCGCCGTCCGCCGTCTGCCGTCTGCTTCGTTCGATCTCGGTGACGGGGACGCCGAG ATTCGGACCTCCGCCGGGGAACGGCTCATGGCTTCCATGGCGCTCGCGGAGGAAACGGAT GCACTGGATTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGCAATGCAA CCCAATGAGGAGGGGATGGGTGAGCATCCTGTCAAGCCTAGGAAGCCATACACGATCACA AAGCAGCGGGAGAAGTGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTG TATGGCCGGTCCTGGCGTCAGATACAAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGAT CGAGATCCCTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGC GGACTCCTGCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATC ATCTTCTGGTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTC GGATGCTTTTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTC AGATGAGGAGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGAT AAATCAATCCCACAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGA TTCTTCTGATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCC AGACCCGAGGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAAC CTCACATTCCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACA TACAAAGGGAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGC TGTAGAGGTTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAAC TTCACAAGCCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGT TCTTCCGTACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCC TTTACACATGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGT AGTGCCGCACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATC AAGCTCGAAGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAAC AGCCAACAAGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGC TTCAAGTTTTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCAT AGGCAGCGGAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATG ACGAAACCGGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTG TTCCACATATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCG GTGGTCTGGCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCAC AGGTGGTTGTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCT CTGTCTGTCTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCATTGTTGATTC TTAATGGAAATCGACTTCTCTGAATGAATGAAGCTGGCATGTTTGGTTGTTGCGGGCTGT TGTGTTGGTAAGAGTCTGAAGATGCTGGTGCCTTTTGTCCCGAGCATGCAGGCAGAGCTT GGCCGTGTTCTTCAGACTGGAGTATGGAAGGAAACATTGTTCATCATTGGTAGCAATTGC ATGCCTTTGAAGGTTTCCAGCCATGGCTGCTAAATTCAATTCCATCAAGTGGGACATTAT GATATTTGTCTGAACATTGCAGTTGCCGAACATTCCAATGTTTGCCGCAACTGTTGGCTA GCAATGTCTGACCATTCAATTCTGTCAAGCAAACAGCAGAGGCTGCTTAGTGACTGGGAA TTGTACGGGACATAAATCGTGAGTTACTGGGATAAACATTAAGGCTTGTTTTTTGTACTT GTATATATCCAGAGGATGCAAATATCTCATGTGAAGAACCGAAATGGAAATGGATAGCTA AAGGATCCATTGCGACAAAACGGGTAAATTTGTATCAGGAAGCAGAGAGTTGTTTTTAAT GAGCTTGTCAACAGAAGCTTGATCCAGCTTGCTGATGTTAATGTTGACTATTATGATTTT AACAACATTGTCAGGTTCAATCAGATGAAGCGAATTTTGCCACAGTTTAAAACCGTGCCT GCAATCCTTTGCCAAACAAGATCCGTCGACTATCCCTGCAATCCTGTGGTTTGAACATAA ATTGACAATCCATGCCATCACAGGAAGCAAGTTACATATTCGCTCATGGAATGCCTTTGC ACGTGTTTGACATATGTGCGGGTCATTCGTCACCCGAAACACAAACATGTAAGAAATATA AGAAGTTTTCTATCAACTGATGTATTTGAGAATTCAGAGTGAAGGAATCACATAGCTTCC TGAAGATATTAGAAAGCTACAGAACTTAGAGACTCTTGATTTACGGGACAGTTCAGTTGG AAAATTGCCATCAACCATAGCCCTCCGATGGCTATAAAATTTGGCGTGGCAAAGAAACGG GTATAAAAATTTGCAGCTGGTGCGACGCCACCACTCCGATGGCTCAACCTTTCCTGGAGT GCAGCTCAAGTTTGGTTGAGATATAGTGATGGGTCTGACATAGGCATCAAACATCTTGCA AGCCTTATGTACATCAAACTTTTTGTGATGATGCAACTCGGGAGGTTGTCTTGAAGATGA GAGGTTTAAGAGTTACGAGAGGGCAATGCGTAGGGAAGGAAGCAGGATATTTGGAAAACA CAAGATTGGTATGCTTCAGCAACCAATTGAACTGAACCGGCTGTAGTTGCCTCGAGGTGT CAGGTTCAAATTTCTGAATTTCAGCTGCACCTTCGTCGACAGCTTCGGTTTGTTCGTAGC ATGCTAGCCTAACTGTTTGACATTGGTGTATATATAATTGTGGCAAACTGGCAACCAATA GTTAGTGCCCAGCTCACACCCCAAATTTCACTTCTGAAACTGTGGTAACTACTGCTCAGG TTATGGCAAACGAACCAGCTTTTCTTCAGCTCTGCAATTGTTTCACTCTCCTCCAAATGA ACCTCTGCCCATTGCTCGGCTTGTCAAGACAAATGTACCTTTGGCGGAACAAAGAGGATA CTGCTAGTTAAATCAGGAAGCAAGATGCTACCGAAAGTCTG
Protein Sequence (399 aa)
>BART1_0-u57237.002 399 150831_barley_pseudomolecules MAGPGVRYKVVREPGAKIEIEIPPPRPKRKPLHPYPRKRADSCNGANPANGPSKLAQISS SSGSDQENGSPVSVLSAMQSDAFGSSMSNPSSRSTSPESSDEENNVPPMVSREEGQQTGI NQSHKEADQENKDTGTSEEDSSDEVQVTSVKLFGKTVVIPDPRKRCSPDPGSGHENGGQT SHSSNKGTSQAPLAVEIPTHTKGEQISQSSNKATSQAPLAVEVPTYTKGEQISQFSNKAT SQAPLAVEIPAFAAPPSGWVLPYNSFPLHFGESAEARITPLHMWWPYYGFPISHPGGLSV VPHNEATDESEAAKSPLVESSSKSLPVESSSDSDDNAETTANKEWKVLESLGTAQVPRSA SSFQLKPSENSAFVRVKPIIGSGEEPARGFVPYKRCRVE