- Transcript BART1_0-u57237.001
- Transcript IDBART1_0-u57237.001
- Gene IDBART1_0-u57237
Barley RTD
Exon Structure of BART1_0-u57237.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 653252718 | 653250589 | - |
| chr7H | 2 | 653255206 | 653252838 | - |
| chr7H | 3 | 653255658 | 653255311 | - |
| chr7H | 4 | 653255899 | 653255838 | - |
| chr7H | 5 | 653256103 | 653255992 | - |
| chr7H | 6 | 653256324 | 653256220 | - |
| chr7H | 7 | 653259055 | 653256663 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.350518 | 0 |
| morex | ETI | 0.0330978 | 0.290493 | 0.0825993 |
| morex | LEA | 0.416735 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.0280175 |
| morex | ROO | 0.559089 | 0.510072 | 0 |
| morex | ROO2 | 0.82834 | 0.330228 | 0.435392 |
| morex | NOD | 0.17336 | 0.178736 | 0.573778 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0.100073 | 0 |
| morex | INF2 | 0 | 0.0000000170181 | 0.760125 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0.0736106 | 0.0788447 | 0 |
| morex | LEM | 0.7351 | 0.96061 | 0.191023 |
| morex | LOD | 0 | 0 | 0.0457105 |
| morex | PAL | 0.365874 | 0.307349 | 0.233897 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g51260.1 | +3 | 7e-118 | 383 | 286/505 (57%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT5G37260 @ ARAPORT AT5G37260.1 @ TAIR |
+3 | 3e-34 | 134 | 101/238 (42%) | Symbols: RVE2, CIR1 | Homeodomain-like superfamily protein | chr5:14751344-14752972 REVERSE LENGTH=287 |
| BRACH PP3 | Bradi1g29680.1.p | +3 | 1e-154 | 487 | 310/499 (62%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (7519 bp)
>BART1_0-u57237.001 7519 150831_barley_pseudomolecules CTTGTTCCTCGTGATATATGGTCAGTTAAAATAGCAGTTGTCCGTGCCTCTCCAATTGTG TTGATTTATTATGTTACTCCTTTTGTGGGTGTAGAGTGAAGATTGTCCGTTAAATACTTA CTAAGTCTCTCAAACATGAGGAAGCGACAAGAAAAAATGTGGAGAAGCTTCTCGTCACCA TGCGATCAAAAATATGTAACATCACAACTCATATATATGTAGGAGTATCTGTCAATTAAA TGGACAATAAAATGTCTTAATTAATTTATGTGGCAGAAAAAGGAGGGCAGCCTAGATTTA GACAAGCCGAGATATGGAAAGGCCACTTGCAAGCCATGTGTCTTGGAGTTGCACTTATTC TAAAATTCACAACCGTCAGCACGATTTATCCAACCTCCCAATTCAACGATGTCGAGCAAG ACGTATTGCTCTTAAATCTGTTTGGATGATTCCCCTTCTTTTCCAAAAATATACTCATGA TATGTATGGTTTATTTTGGGACCGGAGAAAATATGACATGCACATTACTAATTTTTGCAA AAATGATTCCTTTTTTCTGGAGCGCATGGTTCCTATCCGAGACGTACGAAGTCTCTCCAA TAAGATCATGAAATTATCAAGCTAAATCCAGAAGAGATTCTTTTATTGGCCCCACACCAA GGGCTAAAAATGTAACATCGTCATTGATATCTACTCGACAATTATATTCATAGAAATGTG CTTCAAAAAATATGTGGACAAGACGAGAGGAACCTAGAGTTAGAGACACATTGAGAAAGG GAAAGGCCATTCATGGCATGATTACATAATTGGCCTTATCTAAAAGTTACGCGTGCTGTT ATACTTTATATATATCATATACCCTAGAAATATCTCCACGGGTTCGCTCCTGGCCTCTCA TGTTCGAATGGCTCTAGATACTCGTGGCTCTCTTCCGACTCGTTCCTCTCTCTTTGTTTC CACTTGTGCAAAACACCGAGACCCCCACGCGTTGTCACGTGGATTATTCTCGCGTACTAC AATAACAACCGTAATGCAACAACAATGTCCCATCAAATAAATTGTGTATGAGCCAACAAA CCATAGGAAAACAATTCTCTGGTATTACAAACCGTATTACAAATCGCATCAGGATGATTA CATATAAAATCGCACTCAAATCGTACCACATCATCGTTTCAAATTTACGTCGAAGAAAAA CACAACTAGTGAAATAATGTAAACTTATTTTTGAGCTACTAGTAAGAAAATACACTTGTA TATGGTGAGTAGATAAGGGAGAAAGCGCATCCAATGGGAAGCAAAGCCAGAAAAGGAAAG GGCGCGTCGGTCGCTGCATGTGGGCCCGGGGAGGCCGGGGCGTCCTCAGCCACGAGCTGG CCGGCGCTTCTGGAAATTTCATGGCTCCGACAGGTGGGACCCACACATGACGTGGCCACC CTCCCCGCCCCTCCTCGCGAAAATATATTTCCGTCGCTGCTCCACCCCACCTTCCTCCTC CTCCTCCGCCTCCGCTTCCTCCTCCTCCGTCTCCCCCGGCAGCACGTGCGCGCCCCGGCG GCCTCCTCTCTTAGCTGCGCCGCTCGCCGGAGCGTCTCTTCTCGTTTGGCTTCTTTTCTT TGGGTCAGTTTCCTTGGGCCACGGTGTCTCGCCGGCCGGCTCCGGTCGCCGAGAGGGAGG GTGTTTTTTCGGTGCTTCCTGGGCGATCCCGGCGAGAGACGCTTCTGTCCCAGCCTCCGC CGCAGGCCGCCCGCTTCTGTCCCCGCCTTTGCCGCCCGCCGTCTGCTTCTGTCCCCGCCT TCGCCGTCCGCCGTCTGCCGTCTGCTTCGTTCGATCTCGGTGACGGGGACGCCGAGATTC GGACCTCCGCCGGGGAACGGCTCATGGCTTCCATGGCGCTCGCGGAGGTAAAGATCCCTC CTTTTTTTTCTTCTCCGCGCGCGTTCCCTGGCCGTTCCTCGCCTGCTGCAAAATTTTACT TGCGCAGTAAAAAACATTTTTCCTGGGAGGGATTTTACCTTGTATATTTCTGTTCTTGAT GGCTTCTCCGTTGGATAATTTGCCAAAATGAGTTTTTTATTTATGTATTTACTTCTGCAT CTACCACCAGTAGTCTCTAGTTTTTTTTTTTTCAACATTTTTGGAGGGATTTTTATCTTG CGAGAAATGGCCTGTTTCTAGACACTTCTGTTTTGGGAGGATACAGACCACACCACCACA ATATCTTTAGAGGCTTCGAGAGCTAGAAATGGGGAGGACACAACTTACATACATATTTCA TACCAAACATGAGAGCTAGAGATGGGGATTATTTTAGTTAGAGCCACCTACCAAACATGC CAGGAGGCCTGATTGCCAAATCCAGAAACACTTTATGGTGCTTTCCATCCTAGGAAACGG ATGCACTGGATTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGATGTTGCAATGC AACCCAATGAGGAGGGGATGGGTGAGCATCCTGTCAAGCCTAGGAAGCCATACACGATCA CAAAGCAGCGGGAGAAGTGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGC TGTATGGCCGGTCCTGGCGTCAGATACAAGAACACATTGGCACAAAGACCGCTGTCCAAA TCCGAAGCCATGCCCAGAAGTTTTTCTCCAAGGTGGTGCGCGAACCCGGAGCTAAAATTG AGATCGAGATCCCTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGC GTGCGGACTCCTGCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTT CATCATCTTCTGGTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGC AGTCGGATGCTTTTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGT CGTCAGATGAGGAGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAG GGATAAATCAATCCCACAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAG AGGATTCTTCTGATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCA TCCCAGACCCGAGGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGC AAACCTCACATTCCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAA CACATACAAAGGGAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCAT TGGCTGTAGAGGTTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGG CAACTTCACAAGCCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGT GGGTTCTTCCGTACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCA CCCCTTTACACATGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGA GTGTAGTGCCGCACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTG AATCAAGCTCGAAGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGA CAACAGCCAACAAGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGT CAGCTTCAAGTTTTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGA TCATAGGCAGCGGAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTG AATGACGAAACCGGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAG CCTGTTCCACATATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATT GGCGGTGGTCTGGCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGG GCACAGGTGGTTGTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAA TTCTCTGTCTGTCTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCATTGTTG ATTCTTAATGGAAATCGACTTCTCTGAATGAATGAAGCTGGCATGTTTGGTTGTTGCGGG CTGTTGTGTTGGTAAGAGTCTGAAGATGCTGGTGCCTTTTGTCCCGAGCATGCAGGCAGA GCTTGGCCGTGTTCTTCAGACTGGAGTATGGAAGGAAACATTGTTCATCATTGGTAGCAA TTGCATGCCTTTGAAGGTTTCCAGCCATGGCTGCTAAATTCAATTCCATCAAGTGGGACA TTATGATATTTGTCTGAACATTGCAGTTGCCGAACATTCCAATGTTTGCCGCAACTGTTG GCTAGCAATGTCTGACCATTCAATTCTGTCAAGCAAACAGCAGAGGCTGCTTAGTGACTG GGAATTGTACGGGACATAAATCGTGAGTTACTGGGATAAACATTAAGGCTTGTTTTTTGT ACTTGTATATATCCAGAGGATGCAAATATCTCATGTGAAGAACCGAAATGGAAATGGATA GCTAAAGGATCCATTGCGACAAAACGGGTAAATTTGTATCAGGAAGCAGAGAGTTGTTTT TAATGAGCTTGTCAACAGAAGCTTGATCCAGCTTGCTGATGTTAATGTTGACTATTATGA TTTTAACAACATTGTCAGGTTCAATCAGATGAAGCGAATTTTGCCACAGTTTAAAACCGT GCCTGCAATCCTTTGCCAAACAAGATCCGTCGACTATCCCTGCAATCCTGTGGTTTGAAC ATAAATTGACAATCCATGCCATCACAGGAAGCAAGTTACATATTCGCTCATGGAATGCCT TTGCACGTGTTTGACATATGTGCGGGTCATTCGTCACCCGAAACACAAACATGTAAGAAA TATAAGAAGTTTTCTATCAACTGATGTATTTGAGAATTCAGAGTGAAGGAATCACATAGC TTCCTGAAGATATTAGAAAGCTACAGAACTTAGAGACTCTTGATTTACGGGACAGTTCAG TTGGAAAATTGCCATCAACCATAGCCCTCCGATGGCTATAAAATTTGGCGTGGCAAAGAA ACGGGTATAAAAATTTGCAGCTGGTGCGACGCCACCACTCCGATGGCTCAACCTTTCCTG GAGTGCAGCTCAAGTTTGGTTGAGATATAGTGATGGGTCTGACATAGGCATCAAACATCT TGCAAGCCTTATGTACATCAAACTTTTTGTGATGATGCAACTCGGGAGGTTGTCTTGAAG ATGAGAGGTTTAAGAGTTACGAGAGGGCAATGCGTAGGGAAGGAAGCAGGATATTTGGAA AACACAAGATTGGTATGCTTCAGCAACCAATTGAACTGAACCGGCTGTAGTTGCCTCGAG GTGTCAGGTTCAAATTTCTGAATTTCAGCTGCACCTTCGTCGACAGCTTCGGTTTGTTCG TAGCATGCTAGCCTAACTGTTTGACATTGGTGTATATATAATTGTGGCAAACTGGCAACC AATAGTTAGTGCCCAGCTCACACCCCAAATTTCACTTCTGAAACTGTGGTAACTACTGCT CAGGTTATGGCAAACGAACCAGCTTTTCTTCAGCTCTGCAATTGTTTCACTCTCCTCCAA ATGAACCTCTGCCCATTGCTCGGCTTGTCAAGACAAATGTACCTTTGGCGGAACAAAGAG GATACTGCTAGTTAAATCAGGAAGCAAGATGCTACCGAAAGTCTGAAACTAGAATAAACA ATGTTCCGTTTATCGACGCTCCTGATGCTGGTACTGCTGAAACCATGTAGCATCCATATA CATATCAATACCAAGCAGTTCAGCTAGCATGCTCATATATAAACAAACTGAAGCTATGAA CAAAGGTGCTCCTGAAATTCAGAGATTTGAACCTGACATCTCGACGCGACCACAGCCGGT TCGGTTTGGTTCAGTTCAGTTGGTTACTGAAGCATAAACACTTTGCCTTTCCAAACAGGT TATAAGATAAGATTCCGTAGCTAGAGTTGCGATCAACAATGAATAGGCACACCAGTTTCC GTAGCCGGGCTATGGTTGATGGCAGTTTACCATGATAACAACCCTGCAAATCGAGTAGCT TCCTGATATGTTATCTTCAGGAACCTCTATATGCCCTTTTTTTTTTCTAAAACGAAGAAA ACATTCACATGAGGAGCAGAACCAAACACATCACCTGGCACATGGTCAACATAACAGGAT CTTTCGCAAAGAAAAAAAGAAAAAAGAACACAGCAGGAACCAACTGCACATGAGAGAAGA CCACAGATTGAGCATTACAAGACCATTACCAGCAGATGTGCAGTAAAGTACAAGAAGAAT AGCAGCAGGGTAACATTAGCAGCCCAGCAGAAGGTGTGGCATTAGCATCCCAGCAGAATA GCAGCTGGGCTCTCCACTCCAAGTTACAGCATTGGCTATTCAAACGGCTGCCGAAGTAGC CACACCAATCACAACATGAGAGACCATATTCACAACAGCCAATCTGATTCTAGCACATGA TGCTTCATCTAGAGATCTTCACGACAACCCTGGACACTGGGAAAATCAGGAGTCATCTAT CTTTCACAACCAATGTTCAAATTCAGGTTATACATAGTCCCAGGAAATACAATGACATGG CACATGACTGTGCAGCCCAAGCTTATCACCATTTAAATAGTGGAAAAATTCTCCTAATCT GTCAAGGATATTAGAAGGTCATGCACCATCACATGAACCTGACAGTATTGCTCAAAGTTG TCATCGTCAACATTAACTAGCTGGATCATGCTTCTGTTGACAAGTTCACTGAAATAACTC TCTGCTTCTTGATACAAATTCCCCCGTTTTGTAGCAACGAATCCTTCAAGTATCCATTTC CATTTCACTTCTTCACACGAGATATACCCGCCCTCTGGATATATACATAAGTACAACAAA CAAGTCTTGAGGTGGTGTGGAAGATCCCAATAACCAAGTAACGATATATTCTTATATGAA AGACCGGTACCAATGGAACCTTGGAGTCTCTCCCATTCATCTGGCGTTTGATGTTTATTG GATAGCAATTTTGCGATGGTAATTATAGCAAGTGGCAGGCCACCACATTTCCTTAAGATC CTAGCTGAAATCTTTTCTAGTTGAGGAGGGCAGGAATTATCGGAGTGGAAAATTCTCTTA AAGAACAATCTTCGGGAATCAATATAGTTCAGAGGTAGCATTTGATAGAGCTGACCGCCA GAGTGAGAACAAGTTGACTTAGCTACATTGGCGATGCGTGTAGTAACAATTATTCTGCTG CCATTATAACTGTCAGGAAAAACTGCTTTGACAAATTTCCAGTCTTGTTCTTTCCATACA TCATCAATAACAAGCAAGTACCTGTGCAATGTTACACTATTAAGTGAGGTCCACAAATAA TATGATGTTCAGCACTACA
Protein Sequence (462 aa)
>BART1_0-u57237.001 462 150831_barley_pseudomolecules MQPNEEGMGEHPVKPRKPYTITKQREKWTDEEHEKFLEALKLYGRSWRQIQEHIGTKTAV QIRSHAQKFFSKVVREPGAKIEIEIPPPRPKRKPLHPYPRKRADSCNGANPANGPSKLAQ ISSSSGSDQENGSPVSVLSAMQSDAFGSSMSNPSSRSTSPESSDEENNVPPMVSREEGQQ TGINQSHKEADQENKDTGTSEEDSSDEVQVTSVKLFGKTVVIPDPRKRCSPDPGSGHENG GQTSHSSNKGTSQAPLAVEIPTHTKGEQISQSSNKATSQAPLAVEVPTYTKGEQISQFSN KATSQAPLAVEIPAFAAPPSGWVLPYNSFPLHFGESAEARITPLHMWWPYYGFPISHPGG LSVVPHNEATDESEAAKSPLVESSSKSLPVESSSDSDDNAETTANKEWKVLESLGTAQVP RSASSFQLKPSENSAFVRVKPIIGSGEEPARGFVPYKRCRVE