- Transcript BART1_0-u55232.005
- Transcript IDBART1_0-u55232.005
- Gene IDBART1_0-u55232
Barley RTD
Exon Structure of BART1_0-u55232.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588697443 | 588696282 | + |
| chr7H | 2 | 588699997 | 588698062 | + |
| chr7H | 3 | 588700634 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.191474 | 0.197939 |
| morex | ETI | 1.83527 | 0.85371 | 2.77935 |
| morex | LEA | 0.463138 | 0.345738 | 0.631373 |
| morex | EPI | 2.16951 | 1.76396 | 1.60294 |
| morex | ROO | 0.626093 | 0.247087 | 0.172686 |
| morex | ROO2 | 0.169775 | 0 | 0 |
| morex | NOD | 0.200826 | 0 | 1.68325 |
| morex | RAC | 0 | 0 | 0.259187 |
| morex | INF1 | 0.673237 | 0.902137 | 0 |
| morex | INF2 | 1.5342 | 0.333434 | 1.26021 |
| morex | CAR5 | 0.815351 | 0.597473 | 0.954869 |
| morex | CAR15 | 1.54879 | 1.54957 | 0 |
| morex | LEM | 0 | 0.54111 | 0.867875 |
| morex | LOD | 0.315899 | 0.728082 | 0.749848 |
| morex | PAL | 1.47152 | 0.829798 | 0.665858 |
| morex | SEN | 1.86034 | 0.92054 | 1.1122 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28540.1 | +3 | 0.0 | 613 | 379/923 (41%) | protein|resistance protein LR10, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+3 | 3e-56 | 212 | 234/890 (26%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +3 | 0.0 | 1219 | 641/907 (71%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3613 bp)
>BART1_0-u55232.005 3613 150831_barley_pseudomolecules GCAATACCTCCTGTGATCCTCTCCCCATCCCTACCCTACCACCGGAGCAGCCAAGAAAGA AATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGAGCTCCTCGTCTCCAAATCCCTACA CCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCTTCTCTTGAGGTTCATGGCAAGGAT CAAGGTAGTACACAGAGACAGAGTACGCTCCTACCTACGTACTATCTTAAGTTGTCAACC ATCAATTTTCTCCGTTTCTCCAATTTTCTTGTTGACTAACTCTGCCATGGTTTAGCTGCA GTCCGATTAGCATCTCGTGCAAATTCATTCCAGTCCTGTTAGTCCTTGACGCGAACCAAG CTGACCGAAGCCCCGGCTTCCGAGCCTCGCCCTCGTTACGGCTGGCTGAGATGGAGCCCG TGAGCGCGGCCACGGGGGCCATGGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCG ACGGCCACGAGGTTTCCAACGGCGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGC ACGCCTTCCTCAAGGCAACATCCCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGA TGAAGGAGGCGCGGGAGTTGTCGTACGACGTGGAGGACGCGCTAGACAAGTTCATGCTCC ATTCCCGCGACGGATCTGGTGCTGCTGATAACGACTCGGACGGTTTCTCTGAAAAGATGA GCGCCTGGTTGTCGGAGGCGGCGGCTCGCCGTCGGACAGGCCAGGAGATCAGCGATGCCA TCTCCAGGGCCGGCGGCGCCGAGGCGGAGGATCCCCGCCGGGACTGCTCTCTCTACAGAG AGACGGGTGAACCCGTGGGCGTCGACGGGCCGGCTGCTCAACTCATCAGAATGGTGGACG GAGGAGGGAAGCAATTGGATCTGGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCA AGACGACTCTTGCTCGTCGCGTCTACGACACAATGGGTCAGCAGTTCGAGTGTCGGGCTT TCGTCTCCGTCTCCCGGAGACCTCATGTGGTTGCAATTTTGAGCGACATTCGGAGCCAAC TGGGGTATGAGTATGCCCAAAGCTTAACTGAGGATGCAAAATCGCTCCTTGACAGCATCT CCAATTTCCTTCAGGATAAAAGGTACTTCATCATAGTAGATGATGTATGGGACGTTCAAA CATGGGATATTCTCAAGGGTGCCTTTCCAAAAGGCAATTTTGGTAGCAGAATAATCACAA CAACGCGGATACATGAGGTAGCCAAATCATGCTGTGCTTCATGTGGGGGGCGAGTTTATA CAGTAAGCCCTCTCAGTGCCATCGATTCGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATT CTGGTGAGCAATGCCCATCCCACCTGAAAAGAGTTTCTGACAAGATCTTGCAAAAATGTG GTGGTCTGCCGCTGGCAATTATTGCTATATCCGGTTTGCTGATTGCCAATACGCATGAAG ATCAGTGGGAGCAAGTGTACAGTTCTATCAGGCATGGACTTGGAAGCAACCCTGCCGTCG AAAGAACCATGAGGATTTTGTTGCTTGGCTACTTTGATCTTACTCCTTGCCTGAAATCTT GCCTGCTTTATCTCAGTGTATTCCCGGAAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAA TGAGATGGATTGCCGAGGGGTTCATTCCTGAAGAGCATGGGCACACCCTTTATGAATCAG GAGAGAGGTGTTTTAACGAGCTCATCGACCGGAACCTGATCCAACCAGGGGAGATAAATA AGTTTGGGGAGGTGGAAAGCTGTCGAGTCCATGGTATAATTTTTGATTTCCTTGTATCCA TGTCAAACCAAGACAATTTTGTTACTTTATTGGGTGTACCTGGTGTAAACCCTGAGCCAG GAAACAAAGTCCGTCGATTGTCTCTACAGGGTGACAGTGAGATTCCAGCAGATCTTATTT TGTGTAAAGCCCGGTCACTTTCTGTTTTTGGTCATTGTGTTAAAATGCCATCGCTCTGGA AGTCCAGACACTTGCATATTTTAGATTTGGTTTGTTCTGGGAAAGTAGAAGATCAACATC TTGCAGAAATAGGTGGTCTGTTCCATCTTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAA AGCTTCCCCAGCAAATAGCAGAGTTACAGTCCTTGGAGTCACTCGAGATATGTGAAAGCA ACGCGACAACTGAGATTCCACCAGCCATCAATCAACTTACACGGTTGGTACGTCTAGTTG TTCACGACGAAACTATATTACCGGATGAAATCGGTGGCCTCAAAGCATTGCAAGTGTTGA GAGGTATCAATGTCAACACCCAGTCAACCAACTTTGTTCGGCAACTTTGCCTACTATCAA ACCTGAGGGAACTAAGCACAAGTTTTATCAACTATTATGCGGGTGATAACTGGAAGGAGA ATCAGGAAGAGATGGTCAATTCGATTTGTAGGCTAGGCAAAGCAAATCTTCATGTTCTAC ATATTACTATCAATGAGGGAGCAGATGAGATCTTTGAGGAATCATGGTGCCCTGCTCCAC TTAGTCTCCGAGAACTCGTTGTCGAGGTGGGCGTAGTCTCGACTGTTCCGAGATGGATTG GCTCACTTGTCAACCTCCAGAGATTAGCCGTGCTTATGTGGGAAGTTGGGGAGGAGGATG TGGTGATCCTGGGAAGCCTACCTGATCTGCGCCATCTTAGCCTCACTGCACTGGCAGCTG GGTCAAAAGAAGGGCGGCTTAGAGTCGCCCAAAGCCATGGATTCCCTTCCTTGATCAGTT TCCAGATCGGCGGAGAAGAGTGTGCACTGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGA AGCTACAAAATCTTGAGCTTGAGTTCGACGCAGAGGAAACTAGTTCTGTGACTGATGGTG AGTTTGATTTTGGCATCAAGCACCTCCCCTGCCTGACAAGCACATCAGTTCGCTCTACTT GCGACGAATCCATTCGTCCAACATTGGAGGCCGCCATGGAGAGATGCATCAAGGACCATC CCAACCATCCCACGTTGATATGGACGAAATGAACATTTGGAAAAAATCAAGCAGGCTGAT AGAAGCTGCAGTTAGAATGAGCAAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGG AAAGCCAAGATGGGAGCAATATTGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAA GTTCTTGTTACATTCAGTCAGTGGTATTCTATGTATCCAAAAGTCAAATGAGGGCGTGTT CCTATTTTTCCTGAAATGTTTCAGACACGAGCAATCAGCGTGGTGGAACGCATGACTGAT GGCTATCATTTTCTTTTTGTTCCTTCGTTGTTTTTTCGTTGAAGTGAGCAAGTGACATTT TTTAATTTTCTCAAGTACTCCCTCTGTCATGATCTACTCCCTAGTACCTAAATAGTTGTA GTAGTTCTCCTCAATTACAAATATTTAGGAATCTTCTTTTACAGGAAAAGTACATCGATA TCGATATAGGGGCTCAAATTAGGATATCGTGGTTATAGATGCTCTTAACATGAAAGTACC TTTCTACACCCGA
Protein Sequence (893 aa)
>BART1_0-u55232.005 893 150831_barley_pseudomolecules MEPVSAATGAMGSVLGKLGALFADGHEVSNGDVESLKAELQAVHAFLKATSQAEDPGERG RRWMKEARELSYDVEDALDKFMLHSRDGSGAADNDSDGFSEKMSAWLSEAAARRRTGQEI SDAISRAGGAEAEDPRRDCSLYRETGEPVGVDGPAAQLIRMVDGGGKQLDLEVVSMVGCG GLGKTTLARRVYDTMGQQFECRAFVSVSRRPHVVAILSDIRSQLGYEYAQSLTEDAKSLL DSISNFLQDKRYFIIVDDVWDVQTWDILKGAFPKGNFGSRIITTTRIHEVAKSCCASCGG RVYTVSPLSAIDSERLFFKLVFNSGEQCPSHLKRVSDKILQKCGGLPLAIIAISGLLIAN THEDQWEQVYSSIRHGLGSNPAVERTMRILLLGYFDLTPCLKSCLLYLSVFPEGCAVKKE RLVMRWIAEGFIPEEHGHTLYESGERCFNELIDRNLIQPGEINKFGEVESCRVHGIIFDF LVSMSNQDNFVTLLGVPGVNPEPGNKVRRLSLQGDSEIPADLILCKARSLSVFGHCVKMP SLWKSRHLHILDLVCSGKVEDQHLAEIGGLFHLKYLRLKSKVGKLPQQIAELQSLESLEI CESNATTEIPPAINQLTRLVRLVVHDETILPDEIGGLKALQVLRGINVNTQSTNFVRQLC LLSNLRELSTSFINYYAGDNWKENQEEMVNSICRLGKANLHVLHITINEGADEIFEESWC PAPLSLRELVVEVGVVSTVPRWIGSLVNLQRLAVLMWEVGEEDVVILGSLPDLRHLSLTA LAAGSKEGRLRVAQSHGFPSLISFQIGGEECALGLVFEAGSMPKLQNLELEFDAEETSSV TDGEFDFGIKHLPCLTSTSVRSTCDESIRPTLEAAMERCIKDHPNHPTLIWTK