- Transcript BART1_0-u55232.004
- Transcript IDBART1_0-u55232.004
- Gene IDBART1_0-u55232
Barley RTD
Exon Structure of BART1_0-u55232.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588696465 | 588696247 | + |
| chr7H | 2 | 588697443 | 588696583 | + |
| chr7H | 3 | 588699997 | 588698062 | + |
| chr7H | 4 | 588700655 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.516046 | 0.750095 | 0 |
| morex | ETI | 1.11319 | 1.05574 | 1.21913 |
| morex | LEA | 0.676229 | 0.901521 | 0.591849 |
| morex | EPI | 0.329034 | 0 | 0.836365 |
| morex | ROO | 0.653544 | 0.954487 | 0.186799 |
| morex | ROO2 | 0.18997 | 0.707007 | 0.37564 |
| morex | NOD | 1.49146 | 2.84571 | 1.66816 |
| morex | RAC | 1.14588 | 0.634552 | 1.00094 |
| morex | INF1 | 0.963831 | 0.913215 | 0.937167 |
| morex | INF2 | 0.300662 | 1.76078 | 1.37525 |
| morex | CAR5 | 0.436884 | 2.83006 | 2.14073 |
| morex | CAR15 | 1.26241 | 0.863866 | 1.02874 |
| morex | LEM | 0.324957 | 0.359368 | 0.338572 |
| morex | LOD | 2.75854 | 3.09296 | 0.548089 |
| morex | PAL | 0 | 0.31093 | 0.66077 |
| morex | SEN | 0.612881 | 1.42875 | 1.00187 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28540.1 | +2 | 0.0 | 613 | 379/923 (41%) | protein|resistance protein LR10, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+2 | 4e-56 | 211 | 234/889 (26%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +2 | 0.0 | 1219 | 641/907 (71%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3552 bp)
>BART1_0-u55232.004 3552 150831_barley_pseudomolecules CTTTTATATAATACTGACATATGATTATGTGTCATGCAATACCTCCTGTGATCCTCTCCC CATCCCTACCCTACCACCGGAGCAGCCAAGAAAGAAATCTGGCCGCAATCGTTTGGGGTG AACACGGCGGAGCTCCTCGTCTCCAAATCCCTACACCCCTTGAGTCGTTCATCTGCGGAA TCATCCTTGCTTCTCTTGAGGTTCATGGCAAGGATCAAGTCCGATTAGCATCTCGTGCAA ATTCATTCCAGTCCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAGCCCCGGCTTCCG AGCCTCGCCCTCGTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGCCACGGGGGCCAT GGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGAGGTTTCCAACGG CGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCTCAAGGCAACATC CCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGCGCGGGAGTTGTC GTACGACGTGGAGGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGACGGATCTGGTGC TGCTGATAACGACTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTTGTCGGAGGCGGC GGCTCGCCGTCGGACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGCCGGCGGCGCCGA GGCGGAGGATCCCCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGAACCCGTGGGCGT CGACGGGCCGGCTGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAAGCAATTGGATCT GGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCTTGCTCGTCGCGT CTACGACACAATGGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGTCTCCCGGAGACC TCATGTGGTTGCAATTTTGAGCGACATTCGGAGCCAACTGGGGTATGAGTATGCCCAAAG CTTAACTGAGGATGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCTTCAGGATAAAAG GTACTTCATCATAGTAGATGATGTATGGGACGTTCAAACATGGGATATTCTCAAGGGTGC CTTTCCAAAAGGCAATTTTGGTAGCAGAATAATCACAACAACGCGGATACATGAGGTAGC CAAATCATGCTGTGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAGTGCCAT CGATTCGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCCATCCCA CCTGAAAAGAGTTTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGCAATTAT TGCTATATCCGGTTTGCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGTGTACAG TTCTATCAGGCATGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGATTTTGTT GCTTGGCTACTTTGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAGTGTATT CCCGGAAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGAGGGGTT CATTCCTGAAGAGCATGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAACGAGCT CATCGACCGGAACCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGAAAGCTG TCGAGTCCATGGTATAATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAATTTTGT TACTTTATTGGGTGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCGATTGTC TCTACAGGGTGACAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTCACTTTC TGTTTTTGGTCATTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCATATTTT AGATTTGGTTTGTTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGGTCTGTT CCATCTTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAATAGCAGA GTTACAGTCCTTGGAGTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGATTCCACC AGCCATCAATCAACTTACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTATATTACC GGATGAAATCGGTGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAACACCCA GTCAACCAACTTTGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAGCACAAG TTTTATCAACTATTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGTCAATTC GATTTGTAGGCTAGGCAAAGCAAATCTTCATGTTCTACATATTACTATCAATGAGGGAGC AGATGAGATCTTTGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACTCGTTGT CGAGGTGGGCGTAGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCTCCAGAG ATTAGCCGTGCTTATGTGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAAGCCTACC TGATCTGCGCCATCTTAGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGCGGCTTAG AGTCGCCCAAAGCCATGGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAGAAGAGTG TGCACTGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTGAGCTTGA GTTCGACGCAGAGGAAACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCATCAAGCA CCTCCCCTGCCTGACAAGCACATCAGTTCGCTCTACTTGCGACGAATCCATTCGTCCAAC ATTGGAGGCCGCCATGGAGAGATGCATCAAGGACCATCCCAACCATCCCACGTTGATATG GACGAAATGAACATTTGGAAAAAATCAAGCAGGCTGATAGAAGCTGCAGTTAGAATGAGC AAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGATGGGAGCAATAT TGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGTTACATTCAGTCAGT GGTATTCTATGTATCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTCCTGAAATGTTTC AGACACGAGCAATCAGCGTGGTGGAACGCATGACTGATGGCTATCATTTTCTTTTTGTTC CTTCGTTGTTTTTTCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTCTCAAGTACTCCC TCTGTCATGATCTACTCCCTAGTACCTAAATAGTTGTAGTAGTTCTCCTCAATTACAAAT ATTTAGGAATCTTCTTTTACAGGAAAAGTACATCGATATCGATATAGGGGCTCAAATTAG GATATCGTGGTTATAGATGCTCTTAACATGAAAGTACCTTTCTACACCCGAGATCAAAAT GTAGAATTGTAC
Protein Sequence (893 aa)
>BART1_0-u55232.004 893 150831_barley_pseudomolecules MEPVSAATGAMGSVLGKLGALFADGHEVSNGDVESLKAELQAVHAFLKATSQAEDPGERG RRWMKEARELSYDVEDALDKFMLHSRDGSGAADNDSDGFSEKMSAWLSEAAARRRTGQEI SDAISRAGGAEAEDPRRDCSLYRETGEPVGVDGPAAQLIRMVDGGGKQLDLEVVSMVGCG GLGKTTLARRVYDTMGQQFECRAFVSVSRRPHVVAILSDIRSQLGYEYAQSLTEDAKSLL DSISNFLQDKRYFIIVDDVWDVQTWDILKGAFPKGNFGSRIITTTRIHEVAKSCCASCGG RVYTVSPLSAIDSERLFFKLVFNSGEQCPSHLKRVSDKILQKCGGLPLAIIAISGLLIAN THEDQWEQVYSSIRHGLGSNPAVERTMRILLLGYFDLTPCLKSCLLYLSVFPEGCAVKKE RLVMRWIAEGFIPEEHGHTLYESGERCFNELIDRNLIQPGEINKFGEVESCRVHGIIFDF LVSMSNQDNFVTLLGVPGVNPEPGNKVRRLSLQGDSEIPADLILCKARSLSVFGHCVKMP SLWKSRHLHILDLVCSGKVEDQHLAEIGGLFHLKYLRLKSKVGKLPQQIAELQSLESLEI CESNATTEIPPAINQLTRLVRLVVHDETILPDEIGGLKALQVLRGINVNTQSTNFVRQLC LLSNLRELSTSFINYYAGDNWKENQEEMVNSICRLGKANLHVLHITINEGADEIFEESWC PAPLSLRELVVEVGVVSTVPRWIGSLVNLQRLAVLMWEVGEEDVVILGSLPDLRHLSLTA LAAGSKEGRLRVAQSHGFPSLISFQIGGEECALGLVFEAGSMPKLQNLELEFDAEETSSV TDGEFDFGIKHLPCLTSTSVRSTCDESIRPTLEAAMERCIKDHPNHPTLIWTK