- Transcript BART1_0-u55232.003
- Transcript IDBART1_0-u55232.003
- Gene IDBART1_0-u55232
Barley RTD
Exon Structure of BART1_0-u55232.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588696483 | 588696199 | + |
| chr7H | 2 | 588697443 | 588696583 | + |
| chr7H | 3 | 588699997 | 588698062 | + |
| chr7H | 4 | 588700655 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.34447 | 0.733213 |
| morex | ETI | 1.17718 | 0.810115 | 0.210162 |
| morex | LEA | 0 | 0.614177 | 0.320648 |
| morex | EPI | 0.474963 | 0 | 0.544043 |
| morex | ROO | 0 | 0 | 0.16715 |
| morex | ROO2 | 0.160709 | 0 | 0 |
| morex | NOD | 0.228316 | 0.538382 | 0.641773 |
| morex | RAC | 1.21947 | 0.929434 | 1.27259 |
| morex | INF1 | 0.823835 | 0.722469 | 0.384918 |
| morex | INF2 | 1.98223 | 2.04447 | 1.21629 |
| morex | CAR5 | 1.62267 | 1.02906 | 0.963963 |
| morex | CAR15 | 1.57439 | 0.662193 | 1.49748 |
| morex | LEM | 0.913916 | 0.795365 | 0.420952 |
| morex | LOD | 1.35153 | 0.828964 | 0 |
| morex | PAL | 0 | 0.2122 | 0.677532 |
| morex | SEN | 0.558988 | 0.21913 | 0.750388 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28540.1 | +2 | 0.0 | 613 | 379/923 (41%) | protein|resistance protein LR10, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+2 | 3e-56 | 212 | 234/889 (26%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +2 | 0.0 | 1218 | 641/907 (71%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3618 bp)
>BART1_0-u55232.003 3618 150831_barley_pseudomolecules ATTATATTAAATGTTGTGTTAAATGTGTCATGCATAATAATAAATAAACTTTTATATAAT ACTGACATATGATTATGTGTCATGCAATACCTCCTGTGATCCTCTCCCCATCCCTACCCT ACCACCGGAGCAGCCAAGAAAGAAATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGAG CTCCTCGTCTCCAAATCCCTACACCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCTT CTCTTGAGGTTCATGGCAAGGATCAAGGTAGTACACAGAGACAGATCCGATTAGCATCTC GTGCAAATTCATTCCAGTCCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAGCCCCGG CTTCCGAGCCTCGCCCTCGTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGCCACGGG GGCCATGGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGAGGTTTC CAACGGCGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCTCAAGGC AACATCCCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGCGCGGGA GTTGTCGTACGACGTGGAGGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGACGGATC TGGTGCTGCTGATAACGACTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTTGTCGGA GGCGGCGGCTCGCCGTCGGACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGCCGGCGG CGCCGAGGCGGAGGATCCCCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGAACCCGT GGGCGTCGACGGGCCGGCTGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAAGCAATT GGATCTGGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCTTGCTCG TCGCGTCTACGACACAATGGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGTCTCCCG GAGACCTCATGTGGTTGCAATTTTGAGCGACATTCGGAGCCAACTGGGGTATGAGTATGC CCAAAGCTTAACTGAGGATGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCTTCAGGA TAAAAGGTACTTCATCATAGTAGATGATGTATGGGACGTTCAAACATGGGATATTCTCAA GGGTGCCTTTCCAAAAGGCAATTTTGGTAGCAGAATAATCACAACAACGCGGATACATGA GGTAGCCAAATCATGCTGTGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAG TGCCATCGATTCGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCC ATCCCACCTGAAAAGAGTTTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGC AATTATTGCTATATCCGGTTTGCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGT GTACAGTTCTATCAGGCATGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGAT TTTGTTGCTTGGCTACTTTGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAG TGTATTCCCGGAAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGA GGGGTTCATTCCTGAAGAGCATGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAA CGAGCTCATCGACCGGAACCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGA AAGCTGTCGAGTCCATGGTATAATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAA TTTTGTTACTTTATTGGGTGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCG ATTGTCTCTACAGGGTGACAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTC ACTTTCTGTTTTTGGTCATTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCA TATTTTAGATTTGGTTTGTTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGG TCTGTTCCATCTTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAAT AGCAGAGTTACAGTCCTTGGAGTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGAT TCCACCAGCCATCAATCAACTTACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTAT ATTACCGGATGAAATCGGTGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAA CACCCAGTCAACCAACTTTGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAG CACAAGTTTTATCAACTATTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGT CAATTCGATTTGTAGGCTAGGCAAAGCAAATCTTCATGTTCTACATATTACTATCAATGA GGGAGCAGATGAGATCTTTGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACT CGTTGTCGAGGTGGGCGTAGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCT CCAGAGATTAGCCGTGCTTATGTGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAAG CCTACCTGATCTGCGCCATCTTAGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGCG GCTTAGAGTCGCCCAAAGCCATGGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAGA AGAGTGTGCACTGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTGA GCTTGAGTTCGACGCAGAGGAAACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCAT CAAGCACCTCCCCTGCCTGACAAGCACATCAGTTCGCTCTACTTGCGACGAATCCATTCG TCCAACATTGGAGGCCGCCATGGAGAGATGCATCAAGGACCATCCCAACCATCCCACGTT GATATGGACGAAATGAACATTTGGAAAAAATCAAGCAGGCTGATAGAAGCTGCAGTTAGA ATGAGCAAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGATGGGAG CAATATTGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGTTACATTCA GTCAGTGGTATTCTATGTATCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTCCTGAAA TGTTTCAGACACGAGCAATCAGCGTGGTGGAACGCATGACTGATGGCTATCATTTTCTTT TTGTTCCTTCGTTGTTTTTTCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTCTCAAGT ACTCCCTCTGTCATGATCTACTCCCTAGTACCTAAATAGTTGTAGTAGTTCTCCTCAATT ACAAATATTTAGGAATCTTCTTTTACAGGAAAAGTACATCGATATCGATATAGGGGCTCA AATTAGGATATCGTGGTTATAGATGCTCTTAACATGAAAGTACCTTTCTACACCCGAGAT CAAAATGTAGAATTGTAC
Protein Sequence (893 aa)
>BART1_0-u55232.003 893 150831_barley_pseudomolecules MEPVSAATGAMGSVLGKLGALFADGHEVSNGDVESLKAELQAVHAFLKATSQAEDPGERG RRWMKEARELSYDVEDALDKFMLHSRDGSGAADNDSDGFSEKMSAWLSEAAARRRTGQEI SDAISRAGGAEAEDPRRDCSLYRETGEPVGVDGPAAQLIRMVDGGGKQLDLEVVSMVGCG GLGKTTLARRVYDTMGQQFECRAFVSVSRRPHVVAILSDIRSQLGYEYAQSLTEDAKSLL DSISNFLQDKRYFIIVDDVWDVQTWDILKGAFPKGNFGSRIITTTRIHEVAKSCCASCGG RVYTVSPLSAIDSERLFFKLVFNSGEQCPSHLKRVSDKILQKCGGLPLAIIAISGLLIAN THEDQWEQVYSSIRHGLGSNPAVERTMRILLLGYFDLTPCLKSCLLYLSVFPEGCAVKKE RLVMRWIAEGFIPEEHGHTLYESGERCFNELIDRNLIQPGEINKFGEVESCRVHGIIFDF LVSMSNQDNFVTLLGVPGVNPEPGNKVRRLSLQGDSEIPADLILCKARSLSVFGHCVKMP SLWKSRHLHILDLVCSGKVEDQHLAEIGGLFHLKYLRLKSKVGKLPQQIAELQSLESLEI CESNATTEIPPAINQLTRLVRLVVHDETILPDEIGGLKALQVLRGINVNTQSTNFVRQLC LLSNLRELSTSFINYYAGDNWKENQEEMVNSICRLGKANLHVLHITINEGADEIFEESWC PAPLSLRELVVEVGVVSTVPRWIGSLVNLQRLAVLMWEVGEEDVVILGSLPDLRHLSLTA LAAGSKEGRLRVAQSHGFPSLISFQIGGEECALGLVFEAGSMPKLQNLELEFDAEETSSV TDGEFDFGIKHLPCLTSTSVRSTCDESIRPTLEAAMERCIKDHPNHPTLIWTK