- Transcript BART1_0-u55232.002
- Transcript IDBART1_0-u55232.002
- Gene IDBART1_0-u55232
Barley RTD
Exon Structure of BART1_0-u55232.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588696483 | 588696199 | + |
| chr7H | 2 | 588697443 | 588696577 | + |
| chr7H | 3 | 588699997 | 588698062 | + |
| chr7H | 4 | 588700694 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 2.07272 | 1.58426 |
| morex | ETI | 0.528002 | 2.38545 | 0.737045 |
| morex | LEA | 2.00961 | 0.831074 | 1.83289 |
| morex | EPI | 0.823632 | 1.3095 | 0.971596 |
| morex | ROO | 0.521108 | 1.14282 | 0.153573 |
| morex | ROO2 | 0.447184 | 0.126465 | 0.801104 |
| morex | NOD | 1.0215 | 1.67213 | 2.90994 |
| morex | RAC | 1.81893 | 1.37301 | 0 |
| morex | INF1 | 1.16169 | 0.32624 | 0.348752 |
| morex | INF2 | 2.33403 | 1.51263 | 2.19666 |
| morex | CAR5 | 2.30347 | 1.80289 | 1.14202 |
| morex | CAR15 | 4.41479 | 3.11864 | 3.08014 |
| morex | LEM | 1.5565 | 0.90786 | 1.05927 |
| morex | LOD | 1.22232 | 1.13059 | 2.39092 |
| morex | PAL | 0 | 1.09752 | 0.649868 |
| morex | SEN | 1.06994 | 0.193973 | 0.410747 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28540.1 | +2 | 0.0 | 613 | 379/923 (41%) | protein|resistance protein LR10, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+2 | 4e-56 | 211 | 234/889 (26%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +2 | 0.0 | 1219 | 641/907 (71%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3663 bp)
>BART1_0-u55232.002 3663 150831_barley_pseudomolecules ATTATATTAAATGTTGTGTTAAATGTGTCATGCATAATAATAAATAAACTTTTATATAAT ACTGACATATGATTATGTGTCATGCAATACCTCCTGTGATCCTCTCCCCATCCCTACCCT ACCACCGGAGCAGCCAAGAAAGAAATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGAG CTCCTCGTCTCCAAATCCCTACACCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCTT CTCTTGAGGTTCATGGCAAGGATCAAGGTAGTACACAGAGACAGACTGCAGTCCGATTAG CATCTCGTGCAAATTCATTCCAGTCCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAG CCCCGGCTTCCGAGCCTCGCCCTCGTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGC CACGGGGGCCATGGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGA GGTTTCCAACGGCGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCT CAAGGCAACATCCCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGC GCGGGAGTTGTCGTACGACGTGGAGGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGA CGGATCTGGTGCTGCTGATAACGACTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTT GTCGGAGGCGGCGGCTCGCCGTCGGACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGC CGGCGGCGCCGAGGCGGAGGATCCCCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGA ACCCGTGGGCGTCGACGGGCCGGCTGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAA GCAATTGGATCTGGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCT TGCTCGTCGCGTCTACGACACAATGGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGT CTCCCGGAGACCTCATGTGGTTGCAATTTTGAGCGACATTCGGAGCCAACTGGGGTATGA GTATGCCCAAAGCTTAACTGAGGATGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCT TCAGGATAAAAGGTACTTCATCATAGTAGATGATGTATGGGACGTTCAAACATGGGATAT TCTCAAGGGTGCCTTTCCAAAAGGCAATTTTGGTAGCAGAATAATCACAACAACGCGGAT ACATGAGGTAGCCAAATCATGCTGTGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCC TCTCAGTGCCATCGATTCGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCA ATGCCCATCCCACCTGAAAAGAGTTTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCC GCTGGCAATTATTGCTATATCCGGTTTGCTGATTGCCAATACGCATGAAGATCAGTGGGA GCAAGTGTACAGTTCTATCAGGCATGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCAT GAGGATTTTGTTGCTTGGCTACTTTGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTA TCTCAGTGTATTCCCGGAAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGAT TGCCGAGGGGTTCATTCCTGAAGAGCATGGGCACACCCTTTATGAATCAGGAGAGAGGTG TTTTAACGAGCTCATCGACCGGAACCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGA GGTGGAAAGCTGTCGAGTCCATGGTATAATTTTTGATTTCCTTGTATCCATGTCAAACCA AGACAATTTTGTTACTTTATTGGGTGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGT CCGTCGATTGTCTCTACAGGGTGACAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGC CCGGTCACTTTCTGTTTTTGGTCATTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACA CTTGCATATTTTAGATTTGGTTTGTTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAAT AGGTGGTCTGTTCCATCTTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCA GCAAATAGCAGAGTTACAGTCCTTGGAGTCACTCGAGATATGTGAAAGCAACGCGACAAC TGAGATTCCACCAGCCATCAATCAACTTACACGGTTGGTACGTCTAGTTGTTCACGACGA AACTATATTACCGGATGAAATCGGTGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAA TGTCAACACCCAGTCAACCAACTTTGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGA ACTAAGCACAAGTTTTATCAACTATTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGA GATGGTCAATTCGATTTGTAGGCTAGGCAAAGCAAATCTTCATGTTCTACATATTACTAT CAATGAGGGAGCAGATGAGATCTTTGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCG AGAACTCGTTGTCGAGGTGGGCGTAGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGT CAACCTCCAGAGATTAGCCGTGCTTATGTGGGAAGTTGGGGAGGAGGATGTGGTGATCCT GGGAAGCCTACCTGATCTGCGCCATCTTAGCCTCACTGCACTGGCAGCTGGGTCAAAAGA AGGGCGGCTTAGAGTCGCCCAAAGCCATGGATTCCCTTCCTTGATCAGTTTCCAGATCGG CGGAGAAGAGTGTGCACTGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGAAGCTACAAAA TCTTGAGCTTGAGTTCGACGCAGAGGAAACTAGTTCTGTGACTGATGGTGAGTTTGATTT TGGCATCAAGCACCTCCCCTGCCTGACAAGCACATCAGTTCGCTCTACTTGCGACGAATC CATTCGTCCAACATTGGAGGCCGCCATGGAGAGATGCATCAAGGACCATCCCAACCATCC CACGTTGATATGGACGAAATGAACATTTGGAAAAAATCAAGCAGGCTGATAGAAGCTGCA GTTAGAATGAGCAAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGA TGGGAGCAATATTGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGTTA CATTCAGTCAGTGGTATTCTATGTATCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTC CTGAAATGTTTCAGACACGAGCAATCAGCGTGGTGGAACGCATGACTGATGGCTATCATT TTCTTTTTGTTCCTTCGTTGTTTTTTCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTC TCAAGTACTCCCTCTGTCATGATCTACTCCCTAGTACCTAAATAGTTGTAGTAGTTCTCC TCAATTACAAATATTTAGGAATCTTCTTTTACAGGAAAAGTACATCGATATCGATATAGG GGCTCAAATTAGGATATCGTGGTTATAGATGCTCTTAACATGAAAGTACCTTTCTACACC CGAGATCAAAATGTAGAATTGTACAGGCCTATCTTCCCCCGTGACTCAATCCATCAATCA CAG
Protein Sequence (893 aa)
>BART1_0-u55232.002 893 150831_barley_pseudomolecules MEPVSAATGAMGSVLGKLGALFADGHEVSNGDVESLKAELQAVHAFLKATSQAEDPGERG RRWMKEARELSYDVEDALDKFMLHSRDGSGAADNDSDGFSEKMSAWLSEAAARRRTGQEI SDAISRAGGAEAEDPRRDCSLYRETGEPVGVDGPAAQLIRMVDGGGKQLDLEVVSMVGCG GLGKTTLARRVYDTMGQQFECRAFVSVSRRPHVVAILSDIRSQLGYEYAQSLTEDAKSLL DSISNFLQDKRYFIIVDDVWDVQTWDILKGAFPKGNFGSRIITTTRIHEVAKSCCASCGG RVYTVSPLSAIDSERLFFKLVFNSGEQCPSHLKRVSDKILQKCGGLPLAIIAISGLLIAN THEDQWEQVYSSIRHGLGSNPAVERTMRILLLGYFDLTPCLKSCLLYLSVFPEGCAVKKE RLVMRWIAEGFIPEEHGHTLYESGERCFNELIDRNLIQPGEINKFGEVESCRVHGIIFDF LVSMSNQDNFVTLLGVPGVNPEPGNKVRRLSLQGDSEIPADLILCKARSLSVFGHCVKMP SLWKSRHLHILDLVCSGKVEDQHLAEIGGLFHLKYLRLKSKVGKLPQQIAELQSLESLEI CESNATTEIPPAINQLTRLVRLVVHDETILPDEIGGLKALQVLRGINVNTQSTNFVRQLC LLSNLRELSTSFINYYAGDNWKENQEEMVNSICRLGKANLHVLHITINEGADEIFEESWC PAPLSLRELVVEVGVVSTVPRWIGSLVNLQRLAVLMWEVGEEDVVILGSLPDLRHLSLTA LAAGSKEGRLRVAQSHGFPSLISFQIGGEECALGLVFEAGSMPKLQNLELEFDAEETSSV TDGEFDFGIKHLPCLTSTSVRSTCDESIRPTLEAAMERCIKDHPNHPTLIWTK