- Transcript BART1_0-u55232.001
- Transcript IDBART1_0-u55232.001
- Gene IDBART1_0-u55232
Barley RTD
Exon Structure of BART1_0-u55232.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588696465 | 588696138 | + |
| chr7H | 2 | 588697443 | 588696577 | + |
| chr7H | 3 | 588699997 | 588698062 | + |
| chr7H | 4 | 588700635 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.402125 | 0.430286 | 0.270154 |
| morex | ETI | 0.517614 | 0.317776 | 0.517327 |
| morex | LEA | 0.790995 | 0.510065 | 0.506198 |
| morex | EPI | 0.233893 | 2.07136 | 0.336691 |
| morex | ROO | 0.291395 | 0.664775 | 0.321725 |
| morex | ROO2 | 0 | 0.412031 | 0 |
| morex | NOD | 1.02734 | 0.416396 | 2.05226 |
| morex | RAC | 0.26563 | 0.414405 | 1.3389 |
| morex | INF1 | 1.23506 | 1.7666 | 1.51222 |
| morex | INF2 | 1.07178 | 0.800049 | 1.78163 |
| morex | CAR5 | 2.16212 | 0.917736 | 1.96718 |
| morex | CAR15 | 0.886924 | 1.39238 | 1.40927 |
| morex | LEM | 1.39122 | 0.722562 | 0.614091 |
| morex | LOD | 1.63113 | 1.34304 | 2.05251 |
| morex | PAL | 0.835936 | 0.491815 | 0.993759 |
| morex | SEN | 0.509746 | 0.541222 | 0.552227 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28540.1 | +3 | 0.0 | 613 | 379/923 (41%) | protein|resistance protein LR10, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+3 | 3e-56 | 212 | 234/890 (26%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +3 | 0.0 | 1219 | 641/907 (71%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3647 bp)
>BART1_0-u55232.001 3647 150831_barley_pseudomolecules GCCAGCTAAGGCTAGCCAGCAGCAGCCTGCTGCCTAGACGCGTCCCATATTATGATATCG TATTATATTAAATGTTGTGTTAAATGTGTCATGCATAATAATAAATAAACTTTTATATAA TACTGACATATGATTATGTGTCATGCAATACCTCCTGTGATCCTCTCCCCATCCCTACCC TACCACCGGAGCAGCCAAGAAAGAAATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGA GCTCCTCGTCTCCAAATCCCTACACCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCT TCTCTTGAGGTTCATGGCAAGGATCAAGCTGCAGTCCGATTAGCATCTCGTGCAAATTCA TTCCAGTCCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAGCCCCGGCTTCCGAGCCT CGCCCTCGTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGCCACGGGGGCCATGGGGT CCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGAGGTTTCCAACGGCGACG TCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCTCAAGGCAACATCCCAGG CCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGCGCGGGAGTTGTCGTACG ACGTGGAGGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGACGGATCTGGTGCTGCTG ATAACGACTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTTGTCGGAGGCGGCGGCTC GCCGTCGGACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGCCGGCGGCGCCGAGGCGG AGGATCCCCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGAACCCGTGGGCGTCGACG GGCCGGCTGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAAGCAATTGGATCTGGAGG TGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCTTGCTCGTCGCGTCTACG ACACAATGGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGTCTCCCGGAGACCTCATG TGGTTGCAATTTTGAGCGACATTCGGAGCCAACTGGGGTATGAGTATGCCCAAAGCTTAA CTGAGGATGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCTTCAGGATAAAAGGTACT TCATCATAGTAGATGATGTATGGGACGTTCAAACATGGGATATTCTCAAGGGTGCCTTTC CAAAAGGCAATTTTGGTAGCAGAATAATCACAACAACGCGGATACATGAGGTAGCCAAAT CATGCTGTGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAGTGCCATCGATT CGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCCATCCCACCTGA AAAGAGTTTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGCAATTATTGCTA TATCCGGTTTGCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGTGTACAGTTCTA TCAGGCATGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGATTTTGTTGCTTG GCTACTTTGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAGTGTATTCCCGG AAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGAGGGGTTCATTC CTGAAGAGCATGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAACGAGCTCATCG ACCGGAACCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGAAAGCTGTCGAG TCCATGGTATAATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAATTTTGTTACTT TATTGGGTGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCGATTGTCTCTAC AGGGTGACAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTCACTTTCTGTTT TTGGTCATTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCATATTTTAGATT TGGTTTGTTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGGTCTGTTCCATC TTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAATAGCAGAGTTAC AGTCCTTGGAGTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGATTCCACCAGCCA TCAATCAACTTACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTATATTACCGGATG AAATCGGTGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAACACCCAGTCAA CCAACTTTGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAGCACAAGTTTTA TCAACTATTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGTCAATTCGATTT GTAGGCTAGGCAAAGCAAATCTTCATGTTCTACATATTACTATCAATGAGGGAGCAGATG AGATCTTTGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACTCGTTGTCGAGG TGGGCGTAGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCTCCAGAGATTAG CCGTGCTTATGTGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAAGCCTACCTGATC TGCGCCATCTTAGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGCGGCTTAGAGTCG CCCAAAGCCATGGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAGAAGAGTGTGCAC TGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTGAGCTTGAGTTCG ACGCAGAGGAAACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCATCAAGCACCTCC CCTGCCTGACAAGCACATCAGTTCGCTCTACTTGCGACGAATCCATTCGTCCAACATTGG AGGCCGCCATGGAGAGATGCATCAAGGACCATCCCAACCATCCCACGTTGATATGGACGA AATGAACATTTGGAAAAAATCAAGCAGGCTGATAGAAGCTGCAGTTAGAATGAGCAAGAA GATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGATGGGAGCAATATTGGTC CGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGTTACATTCAGTCAGTGGTAT TCTATGTATCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTCCTGAAATGTTTCAGACA CGAGCAATCAGCGTGGTGGAACGCATGACTGATGGCTATCATTTTCTTTTTGTTCCTTCG TTGTTTTTTCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTCTCAAGTACTCCCTCTGT CATGATCTACTCCCTAGTACCTAAATAGTTGTAGTAGTTCTCCTCAATTACAAATATTTA GGAATCTTCTTTTACAGGAAAAGTACATCGATATCGATATAGGGGCTCAAATTAGGATAT CGTGGTTATAGATGCTCTTAACATGAAAGTACCTTTCTACACCCGAG
Protein Sequence (893 aa)
>BART1_0-u55232.001 893 150831_barley_pseudomolecules MEPVSAATGAMGSVLGKLGALFADGHEVSNGDVESLKAELQAVHAFLKATSQAEDPGERG RRWMKEARELSYDVEDALDKFMLHSRDGSGAADNDSDGFSEKMSAWLSEAAARRRTGQEI SDAISRAGGAEAEDPRRDCSLYRETGEPVGVDGPAAQLIRMVDGGGKQLDLEVVSMVGCG GLGKTTLARRVYDTMGQQFECRAFVSVSRRPHVVAILSDIRSQLGYEYAQSLTEDAKSLL DSISNFLQDKRYFIIVDDVWDVQTWDILKGAFPKGNFGSRIITTTRIHEVAKSCCASCGG RVYTVSPLSAIDSERLFFKLVFNSGEQCPSHLKRVSDKILQKCGGLPLAIIAISGLLIAN THEDQWEQVYSSIRHGLGSNPAVERTMRILLLGYFDLTPCLKSCLLYLSVFPEGCAVKKE RLVMRWIAEGFIPEEHGHTLYESGERCFNELIDRNLIQPGEINKFGEVESCRVHGIIFDF LVSMSNQDNFVTLLGVPGVNPEPGNKVRRLSLQGDSEIPADLILCKARSLSVFGHCVKMP SLWKSRHLHILDLVCSGKVEDQHLAEIGGLFHLKYLRLKSKVGKLPQQIAELQSLESLEI CESNATTEIPPAINQLTRLVRLVVHDETILPDEIGGLKALQVLRGINVNTQSTNFVRQLC LLSNLRELSTSFINYYAGDNWKENQEEMVNSICRLGKANLHVLHITINEGADEIFEESWC PAPLSLRELVVEVGVVSTVPRWIGSLVNLQRLAVLMWEVGEEDVVILGSLPDLRHLSLTA LAAGSKEGRLRVAQSHGFPSLISFQIGGEECALGLVFEAGSMPKLQNLELEFDAEETSSV TDGEFDFGIKHLPCLTSTSVRSTCDESIRPTLEAAMERCIKDHPNHPTLIWTK