- Transcript BART1_0-u53703.101
- Transcript IDBART1_0-u53703.101
- Gene IDBART1_0-u53703
Barley RTD
Exon Structure of BART1_0-u53703.101
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385862497 | 385861733 | - |
| chr7H | 2 | 385863972 | 385862587 | - |
| chr7H | 3 | 385864284 | 385864078 | - |
| chr7H | 4 | 385865991 | 385865930 | - |
| chr7H | 5 | 385866338 | 385866227 | - |
| chr7H | 6 | 385866611 | 385866429 | - |
| chr7H | 7 | 385867226 | 385867000 | - |
| chr7H | 8 | 385867533 | 385867389 | - |
| chr7H | 9 | 385871248 | 385871179 | - |
| chr7H | 10 | 385872198 | 385871331 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.175116 | 0 |
| morex | ETI | 1.95373 | 0.939645 | 0.578986 |
| morex | LEA | 0.836912 | 0.11981 | 0.430984 |
| morex | EPI | 0 | 0.00999287 | 0 |
| morex | ROO | 0.238091 | 0.0295316 | 0 |
| morex | ROO2 | 0.265671 | 0.507151 | 0.143454 |
| morex | NOD | 0.283074 | 2.98834 | 2.5378 |
| morex | RAC | 0 | 0.0832023 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0.168209 | 0 |
| morex | CAR5 | 0 | 0.0453353 | 0 |
| morex | CAR15 | 0 | 0.0000000308821 | 0 |
| morex | LEM | 2.1073 | 1.312 | 0.113086 |
| morex | LOD | 0 | 0 | 0.505449 |
| morex | PAL | 0.24131 | 0 | 0 |
| morex | SEN | 1.2415 | 0.224962 | 0.716204 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +3 | 0.0 | 858 | 515/715 (72%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT1G01060 @ ARAPORT AT1G01060.4 @ TAIR |
+3 | 2e-33 | 139 | 64/81 (79%) | Symbols: LHY, LHY1 | Homeodomain-like superfamily protein | chr1:33992-37061 REVERSE LENGTH=644 |
| BRACH PP3 | Bradi3g16515.1.p | +3 | 0.0 | 917 | 547/712 (77%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4025 bp)
>BART1_0-u53703.101 4025 150831_barley_pseudomolecules GCTGGGCGGGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTGCTCGCCCGAGGTAACCTA GAACTAAGAACCATACAAGTTTCCAGAAATTCGTGCTTCCACTGGACGACGCGATTGATA TATACGCTCCCCTCGCAAGTCCGTTCCTAGGTGTGCTAGTTTGTCGACTGAAAACTGTGC AGCAAATGAGCCCACGCTTTTTTTTTTCTGTGCCTGGTCGGTCTCTGTGGTTGCAGTGTT TGATTCCCGTTGCTCTGCTCCAATGATCATGGTGCACAAGCTCAGAATTCTGAGCGCTTC AACTGCATCCTTTTTCTTGCTCTAGTTAGTCCTGTCCATTTTACTGTGGCTAGGAATAAA ATTAATAGTGATTCTATGGTCCAACTTCTTAGAAAACTGTATGGTCGACTAGTAAACTTA GGTACGTGTTTTTTTATCTTGCTTTTTTAGCTTTCACGGGTTTGAGGTGTGCTTTTATCA GATCTCTGATCTAGTATGGTGTTGTTTGTGCTCTGAAGTTGTTTAAAAAGAACGTGTGTA AGTTAGGCTTCTGAGTTTGCTATGCAGGGAGAGAACAGCTTATTTTTTTTATAAGCAGGT GAGTTAAGTTAATTTTGGATTTGCTATGCTGAAAAGAGAGCAGCTTGATCTAGTTTAACT AAGCAGGTGAAGTAATTTGACTAAAATAGATGCTATAGTGAATCGTGCTAAGAAGAAAAT ATATTTTTTATCTGCTATCAAACATTCATGTTTTTTTTTGGTTGTTGTTATGTCAATATA TTTGCTATGATAAAATATCGGGCTGGCTTAAATTCTACTGTTTGTTTCGGAAAGTTCAGC AATCCTAAAGCAACATATGCATATTCAGGCATACTATGTTGTCCTTAAATAACGTGGTTC AGGTTGTGGGAGATAAACTCATGGATGCTCCTTCAAAGGTGTAGGAAGTGTTAAGGGGAT ACATAATCGGTTTTGAGCTGCGAGGCCCTGCATTTCTTCTGCCTGCTGTTTGATTCACGG CCCACTCTTTTCCTTCTATCCATTCAAGCAAAGTACTGGAATTTCTGAGCCCAATTTATT CAGGTCATGGGATTTGTTTGTCCTTAGCAGGTGAGCTGGACTGGGTTGCAGCTTCCCTAT GCTTCTGACTTTTTTTAGTCTAATCTAATTTTGTCTGTGGAATGGTTGCATGATCTGAGT ACTTGAAAGTTTAATCTGATTCTAGAGTTGAAGATAAAGAGAGGAAGGCTAAACTCTGCT GATCCGGTTCATGCGAGCAATGAGCCAACTGCAGTAGAGGTTTACAGTAGAGAGGTTTAG GGGGAGGTATGAGATACTACTCGCGTCAGGTCCAGCGTTTGGCTGGAGACACAGAAGGAG GAGTGCTGTTGTTTGTAGACGCCCTCAACTCCAAGTAACAAAGCGACCAGTTGTCAGCAC TTCCTTTTGTTTTCGCATTTCCCTGGAATTGGAGATGGAGATAAATTCTTCGGGTGCGAA AGCCGTACACAATAACAAAACAGCGGGAGCGGTGGACTGAGGCAGAGCACAAACGGTTCC TTGAAGCCCTCAAACTGTATGGCAGAGCTTGGCAGCGCATAGAAGAGCATGTTGGGACAA AGACGGCCGTGCAAATCAGAAGCCATGCTCAGAAGTTCTTCACAAAGTTGGAAAAGGAAG CTATCAACAATGGTACTTCTCCAGGACAAGCTCATGATATAGACATACCTCCACCACGGC CTAAAAGAAAACCTAACTGTCCATATCCTCGAAAAGGTTGTCTCAGCTCTGAGACACCCA CCAGAGAAGTTCCAAAATCAAGTGTTAGCTTGAGCAATAGCAATTCACAAATGGAAAGCA ATGGAACTCTTCAGGTCACCAGCACTCAGAAACTTCAAAGGAAGGAGTTGTCTGGAAACG GCAGTTGCTCAGAAGTTATTAATATCTTTAGAGAAGCACCATCTGCCTCATTTTCTTCCT CTAACAAGAGCTCTTCAAATCATGGTGTCTCTGGGGGAATTGAACCGACTAAAACAGAAA TCAAAGATATGGCAGCCATGGAAAGGAAATCTACTTCCGTTGATGTGGCGAAGGATGTAA AAGATATTAATGACCAGGAAATGGAAAGGAACAACAGAGTCCACATCAGTTCTAAATATG ACCGTTCTCATGAAGATTGTTTGGATAGCTCAATGAAACACATGCAGTTGAAGCCAAATA CTGTGGAGACAACATACACGGGTCAACATGTTGCAAGTGCTCCACTCTACCAAATGAATA AGACTGGGGCAACTGGCACTCCAGACCCTGGAACTGAAGGAAGTCATCCTGATCAAACGA ATGATCAAGTGGGAGGAGCTAATGGAAGTATGGACTGCATCCATCCAACACTTCCCGTGG ATCTAAAATTTGGCAGCAGCTCCACAGCGCAGCCCTTTCCCCACAACTATTCAGGCTTTG CACCAACGATGCAATGCCAGTGCAACCAAGATGCCTACAGGTCATCTGTTGATATGTCGT CCACCTTCTCCAACATGCTCGTTTCCACATTGTTATCAAACCCCACAGTACATGCAGCTG CAAGGCTTGCAGCATCATACTGGCCAGCAGCAGACAGCAACATCCCTGTCGATCCAAATC AAGGAATTTTTGCTCAGAATGCTCAAGGAAGACATATTGTTTCTCCTCCAAGCATGGCTT CTGTGGTAGCAGCTACAGTTGCTGCGGCTTCGGCATGGTGGGCAACACAAGGTCTTCTCC CTCTTTTTGCTCCCCCCATGGCTTTTCCATTTGTCCCAGTTCCTACCGCTTCCTTTCCCA CAGCGGATGTCCAGCGAGCTACAGAGAACTGCCCAGTGGACAACGCACCAAAGGAATGCC AAGTAGCTCAGGGGCAAGGTCAACCTGAAGCTATGATAGTTGTAGCATCTTCTGGGTCCG GCGAGAGTGGAAAAGGAGAGGTGTGTCCTCACACTGAGTTAAATATATCTCTGGCTGATA AAGCTGAGACAACACCTGCCACAGGAGCTGAAACAAGTGATGCTTTGGGCAACAAGAAGA AGCAGGATCGCTCTTCATGTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGCAGAAC ATGTTCCTGAGAACCAAGATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAGTAATT CTTCAGCTGGTGACATGAACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGATTCAT GGAAGGAAGTTTCCGAGGAGGGTCGTATGGCTTTCGATAAACTGTTCAGTAGAGGAAAGC TTCCCCAAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGTGGTTCCCAGAGGGGAGC AAGATGAAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGCTGCAGTTATGGACCATG AACTTGACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGAATTGTCACACCTGAATA TGAAATCCCGCCGGACAGGCTTCAAACCTTACAAGAGGTGCTCGGTGGAAGCAAAGGAGA ATAGGGTGCCGGCTGCTGACGAGGTTGGTACCAAAAGGATTCGCCTTGACAGCGAACCCT CCACGTGATTTACTTCCCACGACATGATTACCAGCCTGCACAAGTAGTGTATTTTCAAGA AATTGCGGTATTTACATCTAAGCTACTATAGGACTTGCCAGTCCTTGCAATGCAGTGTTT CACAGAACTCAATTTGTTATGTGTTGTATGTTAATGCTTGCCGAGCAGCCCTTTTAGACT GTCAATTAAGCATTAAGCACCTATGCATGCTACTTTATTGGTAAAAAAGTAATTCTGCTT ATTTTTCTGTGATGAAGGATAATACTTGTAATTTTGCTTCATTTTACTGGATCATGTAGA TTTAATTCCCGAAGGGAGAGCATGATCGCCTTGTGTTATTTTTATTTTCTTGAGAAAAAT ATTGTGCTATGTATATGCACCCTAGATTTGAAGTTTCTTGGATGGTCCAGCTTTCTCAAA CAGTG
Protein Sequence (585 aa)
>BART1_0-u53703.101 585 150831_barley_pseudomolecules MESNGTLQVTSTQKLQRKELSGNGSCSEVINIFREAPSASFSSSNKSSSNHGVSGGIEPT KTEIKDMAAMERKSTSVDVAKDVKDINDQEMERNNRVHISSKYDRSHEDCLDSSMKHMQL KPNTVETTYTGQHVASAPLYQMNKTGATGTPDPGTEGSHPDQTNDQVGGANGSMDCIHPT LPVDLKFGSSSTAQPFPHNYSGFAPTMQCQCNQDAYRSSVDMSSTFSNMLVSTLLSNPTV HAAARLAASYWPAADSNIPVDPNQGIFAQNAQGRHIVSPPSMASVVAATVAAASAWWATQ GLLPLFAPPMAFPFVPVPTASFPTADVQRATENCPVDNAPKECQVAQGQGQPEAMIVVAS SGSGESGKGEVCPHTELNISLADKAETTPATGAETSDALGNKKKQDRSSCGSNTPSSSDV EAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVSEEGRMAFDKLFS RGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNKSAAVMDHELDTLVGPRASFPIELS HLNMKSRRTGFKPYKRCSVEAKENRVPAADEVGTKRIRLDSEPST