Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G070870	91.0	-	-	10538	-1044	Containing

Transcripts from Gene BART1_0-u53703

Transcript	Length(bp)	Description
BART1_0-u53703.001	3243	3243 bp MSTRG.53703.1 MSTRG.53703
BART1_0-u53703.002	4295	4295 bp MSTRG.53703.2 MSTRG.53703
BART1_0-u53703.003	3397	3397 bp MSTRG.53703.3 MSTRG.53703
BART1_0-u53703.004	3430	3430 bp MSTRG.53703.4 MSTRG.53703
BART1_0-u53703.005	3462	3462 bp MSTRG.53703.5 MSTRG.53703
BART1_0-u53703.006	4386	4386 bp MSTRG.53703.6 MSTRG.53703
BART1_0-u53703.007	4306	4306 bp MSTRG.53703.7 MSTRG.53703
BART1_0-u53703.008	3321	3321 bp MSTRG.53703.8 MSTRG.53703
BART1_0-u53703.009	5855	5855 bp MSTRG.53703.9 MSTRG.53703
BART1_0-u53703.010	4803	4803 bp MSTRG.53703.10 MSTRG.53703
BART1_0-u53703.011	3330	3330 bp MSTRG.53703.11 MSTRG.53703
BART1_0-u53703.012	4303	4303 bp MSTRG.53703.12 MSTRG.53703
BART1_0-u53703.013	3311	3311 bp MSTRG.53703.13 MSTRG.53703
BART1_0-u53703.014	3331	3331 bp MSTRG.53703.14 MSTRG.53703
BART1_0-u53703.015	4367	4367 bp MSTRG.53703.15 MSTRG.53703
BART1_0-u53703.016	3234	3234 bp MSTRG.53703.16 MSTRG.53703
BART1_0-u53703.017	3410	3410 bp MSTRG.53703.17 MSTRG.53703
BART1_0-u53703.018	4222	4222 bp MSTRG.53703.18 MSTRG.53703
BART1_0-u53703.019	3508	3508 bp MSTRG.53703.19 MSTRG.53703
BART1_0-u53703.020	3293	3293 bp MSTRG.53703.20 MSTRG.53703
BART1_0-u53703.021	4632	4632 bp MSTRG.53703.21 MSTRG.53703
BART1_0-u53703.022	3239	3239 bp MSTRG.53703.22 MSTRG.53703
BART1_0-u53703.023	3229	3229 bp MSTRG.53703.23 MSTRG.53703
BART1_0-u53703.024	3319	3319 bp MSTRG.53703.24 MSTRG.53703
BART1_0-u53703.025	4188	4188 bp MSTRG.53703.25 MSTRG.53703
BART1_0-u53703.026	3298	3298 bp MSTRG.53703.26 MSTRG.53703
BART1_0-u53703.027	4078	4078 bp MSTRG.53703.27 MSTRG.53703
BART1_0-u53703.028	5097	5097 bp MSTRG.53703.28 MSTRG.53703
BART1_0-u53703.029	4709	4709 bp MSTRG.53703.29 MSTRG.53703
BART1_0-u53703.030	3401	3401 bp MSTRG.53703.30 MSTRG.53703
BART1_0-u53703.031	5870	5870 bp MSTRG.53703.31 MSTRG.53703
BART1_0-u53703.032	4290	4290 bp MSTRG.53703.32 MSTRG.53703
BART1_0-u53703.033	4850	4850 bp MSTRG.53703.33 MSTRG.53703
BART1_0-u53703.034	3453	3453 bp MSTRG.53703.34 MSTRG.53703
BART1_0-u53703.035	3288	3288 bp MSTRG.53703.35 MSTRG.53703
BART1_0-u53703.036	3199	3199 bp MSTRG.53703.36 MSTRG.53703
BART1_0-u53703.037	3383	3383 bp MSTRG.53703.37 MSTRG.53703
BART1_0-u53703.038	3417	3417 bp MSTRG.53703.38 MSTRG.53703
BART1_0-u53703.039	4059	4059 bp MSTRG.53703.39 MSTRG.53703
BART1_0-u53703.040	4150	4150 bp MSTRG.53703.40 MSTRG.53703
BART1_0-u53703.041	3367	3367 bp MSTRG.53703.41 MSTRG.53703
BART1_0-u53703.042	4813	4813 bp MSTRG.53703.42 MSTRG.53703
BART1_0-u53703.043	3571	3571 bp MSTRG.53703.43 MSTRG.53703
BART1_0-u53703.044	4181	4181 bp MSTRG.53703.44 MSTRG.53703
BART1_0-u53703.045	3461	3461 bp MSTRG.53703.45 MSTRG.53703
BART1_0-u53703.046	4082	4082 bp MSTRG.53703.46 MSTRG.53703
BART1_0-u53703.047	3210	3210 bp MSTRG.53703.47 MSTRG.53703
BART1_0-u53703.048	3327	3327 bp MSTRG.53703.48 MSTRG.53703
BART1_0-u53703.049	3470	3470 bp MSTRG.53703.49 MSTRG.53703
BART1_0-u53703.050	4373	4373 bp MSTRG.53703.50 MSTRG.53703
BART1_0-u53703.051	4331	4331 bp MSTRG.53703.51 MSTRG.53703
BART1_0-u53703.052	3293	3293 bp MSTRG.53703.52 MSTRG.53703
BART1_0-u53703.053	4260	4260 bp MSTRG.53703.53 MSTRG.53703
BART1_0-u53703.054	3109	3109 bp MSTRG.53703.54 MSTRG.53703
BART1_0-u53703.055	4266	4266 bp MSTRG.53703.55 MSTRG.53703
BART1_0-u53703.056	4090	4090 bp MSTRG.53703.56 MSTRG.53703
BART1_0-u53703.057	3217	3217 bp MSTRG.53703.57 MSTRG.53703
BART1_0-u53703.058	4335	4335 bp MSTRG.53703.58 MSTRG.53703
BART1_0-u53703.059	3391	3391 bp MSTRG.53703.59 MSTRG.53703
BART1_0-u53703.060	3342	3342 bp MSTRG.53703.60 MSTRG.53703
BART1_0-u53703.061	3267	3267 bp MSTRG.53703.61 MSTRG.53703
BART1_0-u53703.062	3969	3969 bp MSTRG.53703.62 MSTRG.53703
BART1_0-u53703.063	3369	3369 bp MSTRG.53703.63 MSTRG.53703
BART1_0-u53703.064	3277	3277 bp MSTRG.53703.64 MSTRG.53703
BART1_0-u53703.065	3438	3438 bp MSTRG.53703.65 MSTRG.53703
BART1_0-u53703.066	3263	3263 bp MSTRG.53703.66 MSTRG.53703
BART1_0-u53703.067	3173	3173 bp MSTRG.53703.67 MSTRG.53703
BART1_0-u53703.068	3291	3291 bp MSTRG.53703.68 MSTRG.53703
BART1_0-u53703.069	4234	4234 bp MSTRG.53703.69 MSTRG.53703
BART1_0-u53703.070	4150	4150 bp MSTRG.53703.70 MSTRG.53703
BART1_0-u53703.071	3331	3331 bp MSTRG.53703.71 MSTRG.53703
BART1_0-u53703.072	4337	4337 bp MSTRG.53703.72 MSTRG.53703
BART1_0-u53703.073	3360	3360 bp MSTRG.53703.73 MSTRG.53703
BART1_0-u53703.074	3166	3166 bp MSTRG.53703.74 MSTRG.53703
BART1_0-u53703.075	3536	3536 bp MSTRG.53703.75 MSTRG.53703
BART1_0-u53703.076	3457	3457 bp MSTRG.53703.76 MSTRG.53703
BART1_0-u53703.077	4069	4069 bp MSTRG.53703.77 MSTRG.53703
BART1_0-u53703.078	3375	3375 bp MSTRG.53703.78 MSTRG.53703
BART1_0-u53703.079	3278	3278 bp MSTRG.53703.79 MSTRG.53703
BART1_0-u53703.080	3297	3297 bp MSTRG.53703.80 MSTRG.53703
BART1_0-u53703.081	4176	4176 bp MSTRG.53703.81 MSTRG.53703
BART1_0-u53703.082	3208	3208 bp MSTRG.53703.82 MSTRG.53703
BART1_0-u53703.083	5620	5620 bp MSTRG.53703.83 MSTRG.53703
BART1_0-u53703.084	4225	4225 bp MSTRG.53703.84 MSTRG.53703
BART1_0-u53703.085	4143	4143 bp MSTRG.53703.85 MSTRG.53703
BART1_0-u53703.086	3044	3044 bp MSTRG.53703.86 MSTRG.53703
BART1_0-u53703.087	4136	4136 bp MSTRG.53703.87 MSTRG.53703
BART1_0-u53703.088	3263	3263 bp MSTRG.53703.88 MSTRG.53703
BART1_0-u53703.089	3254	3254 bp MSTRG.53703.89 MSTRG.53703
BART1_0-u53703.090	3362	3362 bp MSTRG.53703.90 MSTRG.53703
BART1_0-u53703.091	5674	5674 bp MSTRG.53703.91 MSTRG.53703
BART1_0-u53703.092	3374	3374 bp MSTRG.53703.92 MSTRG.53703
BART1_0-u53703.093	3172	3172 bp MSTRG.53703.93 MSTRG.53703
BART1_0-u53703.094	3271	3271 bp MSTRG.53703.94 MSTRG.53703
BART1_0-u53703.095	4047	4047 bp MSTRG.53703.95 MSTRG.53703
BART1_0-u53703.096	3125	3125 bp MSTRG.53703.96 MSTRG.53703
BART1_0-u53703.097	3205	3205 bp MSTRG.53703.97 MSTRG.53703
BART1_0-u53703.098	3346	3346 bp MSTRG.53703.98 MSTRG.53703
BART1_0-u53703.099	3158	3158 bp MSTRG.53703.99 MSTRG.53703
BART1_0-u53703.100	3371	3371 bp MSTRG.53703.100 MSTRG.53703
BART1_0-u53703.101	4025	4025 bp MSTRG.53703.101 MSTRG.53703
BART1_0-u53703.102	3150	3150 bp MSTRG.53703.102 MSTRG.53703
BART1_0-u53703.103	4009	4009 bp MSTRG.53703.103 MSTRG.53703
BART1_0-u53703.104	3014	3014 bp MSTRG.53703.104 MSTRG.53703
BART1_0-u53703.105	3223	3223 bp MSTRG.53703.105 MSTRG.53703
BART1_0-u53703.106	4136	4136 bp MSTRG.53703.106 MSTRG.53703
BART1_0-u53703.107	4041	4041 bp MSTRG.53703.107 MSTRG.53703
BART1_0-u53703.108	4108	4108 bp MSTRG.53703.108 MSTRG.53703
BART1_0-u53703.109	3422	3422 bp MSTRG.53703.109 MSTRG.53703
BART1_0-u53703.110	3143	3143 bp MSTRG.53703.110 MSTRG.53703
BART1_0-u53703.111	4062	4062 bp MSTRG.53703.111 MSTRG.53703
BART1_0-u53703.112	3309	3309 bp MSTRG.53703.112 MSTRG.53703
BART1_0-u53703.113	3298	3298 bp MSTRG.53703.113 MSTRG.53703
BART1_0-u53703.114	3317	3317 bp MSTRG.53703.114 MSTRG.53703
BART1_0-u53703.115	3314	3314 bp MSTRG.53703.115 MSTRG.53703
BART1_0-u53703.116	4024	4024 bp MSTRG.53703.116 MSTRG.53703
BART1_0-u53703.117	3077	3077 bp MSTRG.53703.117 MSTRG.53703
BART1_0-u53703.118	3186	3186 bp MSTRG.53703.118 MSTRG.53703
BART1_0-u53703.119	2799	2799 bp MSTRG.53703.119 MSTRG.53703
BART1_0-u53703.120	2125	2125 bp MSTRG.53703.120 MSTRG.53703
BART1_0-u53703.121	1673	1673 bp MSTRG.53703.121 MSTRG.53703
BART1_0-u53703.122	1592	1592 bp MSTRG.53703.122 MSTRG.53703
BART1_0-u53703.123	1471	1471 bp MSTRG.53703.123 MSTRG.53703
BART1_0-u53703.124	2391	2391 bp MSTRG.53703.124 MSTRG.53703
BART1_0-u53703.125	1416	1416 bp MSTRG.53703.125 MSTRG.53703
BART1_0-u53703.126	1572	1572 bp MSTRG.53703.126 MSTRG.53703

Exon Structure of BART1_0-u53703

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g06110.2	+1	0.0	549	369/539 (68%)	protein|MYB family transcription factor, putative, expressed
TAIR PP10	AT1G01060 @ ARAPORT AT1G01060.4 @ TAIR	+1	4e-32	135	60/72 (83%)	Symbols: LHY, LHY1 | Homeodomain-like superfamily protein | chr1:33992-37061 REVERSE LENGTH=644
BRACH PP3	Bradi3g16515.1.p	+1	0.0	597	393/532 (74%)	pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0009651	response to salt stress
GO:0009753	response to jasmonic acid
GO:0046686	response to cadmium ion
GO:0043433	negative regulation of DNA-binding transcription factor activity
GO:0009751	response to salicylic acid
GO:0007623	circadian rhythm
GO:0042754	negative regulation of circadian rhythm
GO:0009723	response to ethylene
GO:0009733	response to auxin
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0009739	response to gibberellin
GO:0001067	regulatory region nucleic acid binding
GO:0009409	response to cold
GO:0003700	DNA-binding transcription factor activity
GO:0009737	response to abscisic acid
GO:0048574	long-day photoperiodism, flowering

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons