- Gene BART1_0-u53703
- Gene IDBART1_0-u53703
- Location chr7H: 385861564 - 385873145
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU7Hr1G070870 | 91.0 | - | - | 10538 | -1044 | Containing |
Transcripts from Gene BART1_0-u53703
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u53703.001 | 3243 | 3243 bp MSTRG.53703.1 MSTRG.53703 |
BART1_0-u53703.002 | 4295 | 4295 bp MSTRG.53703.2 MSTRG.53703 |
BART1_0-u53703.003 | 3397 | 3397 bp MSTRG.53703.3 MSTRG.53703 |
BART1_0-u53703.004 | 3430 | 3430 bp MSTRG.53703.4 MSTRG.53703 |
BART1_0-u53703.005 | 3462 | 3462 bp MSTRG.53703.5 MSTRG.53703 |
BART1_0-u53703.006 | 4386 | 4386 bp MSTRG.53703.6 MSTRG.53703 |
BART1_0-u53703.007 | 4306 | 4306 bp MSTRG.53703.7 MSTRG.53703 |
BART1_0-u53703.008 | 3321 | 3321 bp MSTRG.53703.8 MSTRG.53703 |
BART1_0-u53703.009 | 5855 | 5855 bp MSTRG.53703.9 MSTRG.53703 |
BART1_0-u53703.010 | 4803 | 4803 bp MSTRG.53703.10 MSTRG.53703 |
BART1_0-u53703.011 | 3330 | 3330 bp MSTRG.53703.11 MSTRG.53703 |
BART1_0-u53703.012 | 4303 | 4303 bp MSTRG.53703.12 MSTRG.53703 |
BART1_0-u53703.013 | 3311 | 3311 bp MSTRG.53703.13 MSTRG.53703 |
BART1_0-u53703.014 | 3331 | 3331 bp MSTRG.53703.14 MSTRG.53703 |
BART1_0-u53703.015 | 4367 | 4367 bp MSTRG.53703.15 MSTRG.53703 |
BART1_0-u53703.016 | 3234 | 3234 bp MSTRG.53703.16 MSTRG.53703 |
BART1_0-u53703.017 | 3410 | 3410 bp MSTRG.53703.17 MSTRG.53703 |
BART1_0-u53703.018 | 4222 | 4222 bp MSTRG.53703.18 MSTRG.53703 |
BART1_0-u53703.019 | 3508 | 3508 bp MSTRG.53703.19 MSTRG.53703 |
BART1_0-u53703.020 | 3293 | 3293 bp MSTRG.53703.20 MSTRG.53703 |
BART1_0-u53703.021 | 4632 | 4632 bp MSTRG.53703.21 MSTRG.53703 |
BART1_0-u53703.022 | 3239 | 3239 bp MSTRG.53703.22 MSTRG.53703 |
BART1_0-u53703.023 | 3229 | 3229 bp MSTRG.53703.23 MSTRG.53703 |
BART1_0-u53703.024 | 3319 | 3319 bp MSTRG.53703.24 MSTRG.53703 |
BART1_0-u53703.025 | 4188 | 4188 bp MSTRG.53703.25 MSTRG.53703 |
BART1_0-u53703.026 | 3298 | 3298 bp MSTRG.53703.26 MSTRG.53703 |
BART1_0-u53703.027 | 4078 | 4078 bp MSTRG.53703.27 MSTRG.53703 |
BART1_0-u53703.028 | 5097 | 5097 bp MSTRG.53703.28 MSTRG.53703 |
BART1_0-u53703.029 | 4709 | 4709 bp MSTRG.53703.29 MSTRG.53703 |
BART1_0-u53703.030 | 3401 | 3401 bp MSTRG.53703.30 MSTRG.53703 |
BART1_0-u53703.031 | 5870 | 5870 bp MSTRG.53703.31 MSTRG.53703 |
BART1_0-u53703.032 | 4290 | 4290 bp MSTRG.53703.32 MSTRG.53703 |
BART1_0-u53703.033 | 4850 | 4850 bp MSTRG.53703.33 MSTRG.53703 |
BART1_0-u53703.034 | 3453 | 3453 bp MSTRG.53703.34 MSTRG.53703 |
BART1_0-u53703.035 | 3288 | 3288 bp MSTRG.53703.35 MSTRG.53703 |
BART1_0-u53703.036 | 3199 | 3199 bp MSTRG.53703.36 MSTRG.53703 |
BART1_0-u53703.037 | 3383 | 3383 bp MSTRG.53703.37 MSTRG.53703 |
BART1_0-u53703.038 | 3417 | 3417 bp MSTRG.53703.38 MSTRG.53703 |
BART1_0-u53703.039 | 4059 | 4059 bp MSTRG.53703.39 MSTRG.53703 |
BART1_0-u53703.040 | 4150 | 4150 bp MSTRG.53703.40 MSTRG.53703 |
BART1_0-u53703.041 | 3367 | 3367 bp MSTRG.53703.41 MSTRG.53703 |
BART1_0-u53703.042 | 4813 | 4813 bp MSTRG.53703.42 MSTRG.53703 |
BART1_0-u53703.043 | 3571 | 3571 bp MSTRG.53703.43 MSTRG.53703 |
BART1_0-u53703.044 | 4181 | 4181 bp MSTRG.53703.44 MSTRG.53703 |
BART1_0-u53703.045 | 3461 | 3461 bp MSTRG.53703.45 MSTRG.53703 |
BART1_0-u53703.046 | 4082 | 4082 bp MSTRG.53703.46 MSTRG.53703 |
BART1_0-u53703.047 | 3210 | 3210 bp MSTRG.53703.47 MSTRG.53703 |
BART1_0-u53703.048 | 3327 | 3327 bp MSTRG.53703.48 MSTRG.53703 |
BART1_0-u53703.049 | 3470 | 3470 bp MSTRG.53703.49 MSTRG.53703 |
BART1_0-u53703.050 | 4373 | 4373 bp MSTRG.53703.50 MSTRG.53703 |
BART1_0-u53703.051 | 4331 | 4331 bp MSTRG.53703.51 MSTRG.53703 |
BART1_0-u53703.052 | 3293 | 3293 bp MSTRG.53703.52 MSTRG.53703 |
BART1_0-u53703.053 | 4260 | 4260 bp MSTRG.53703.53 MSTRG.53703 |
BART1_0-u53703.054 | 3109 | 3109 bp MSTRG.53703.54 MSTRG.53703 |
BART1_0-u53703.055 | 4266 | 4266 bp MSTRG.53703.55 MSTRG.53703 |
BART1_0-u53703.056 | 4090 | 4090 bp MSTRG.53703.56 MSTRG.53703 |
BART1_0-u53703.057 | 3217 | 3217 bp MSTRG.53703.57 MSTRG.53703 |
BART1_0-u53703.058 | 4335 | 4335 bp MSTRG.53703.58 MSTRG.53703 |
BART1_0-u53703.059 | 3391 | 3391 bp MSTRG.53703.59 MSTRG.53703 |
BART1_0-u53703.060 | 3342 | 3342 bp MSTRG.53703.60 MSTRG.53703 |
BART1_0-u53703.061 | 3267 | 3267 bp MSTRG.53703.61 MSTRG.53703 |
BART1_0-u53703.062 | 3969 | 3969 bp MSTRG.53703.62 MSTRG.53703 |
BART1_0-u53703.063 | 3369 | 3369 bp MSTRG.53703.63 MSTRG.53703 |
BART1_0-u53703.064 | 3277 | 3277 bp MSTRG.53703.64 MSTRG.53703 |
BART1_0-u53703.065 | 3438 | 3438 bp MSTRG.53703.65 MSTRG.53703 |
BART1_0-u53703.066 | 3263 | 3263 bp MSTRG.53703.66 MSTRG.53703 |
BART1_0-u53703.067 | 3173 | 3173 bp MSTRG.53703.67 MSTRG.53703 |
BART1_0-u53703.068 | 3291 | 3291 bp MSTRG.53703.68 MSTRG.53703 |
BART1_0-u53703.069 | 4234 | 4234 bp MSTRG.53703.69 MSTRG.53703 |
BART1_0-u53703.070 | 4150 | 4150 bp MSTRG.53703.70 MSTRG.53703 |
BART1_0-u53703.071 | 3331 | 3331 bp MSTRG.53703.71 MSTRG.53703 |
BART1_0-u53703.072 | 4337 | 4337 bp MSTRG.53703.72 MSTRG.53703 |
BART1_0-u53703.073 | 3360 | 3360 bp MSTRG.53703.73 MSTRG.53703 |
BART1_0-u53703.074 | 3166 | 3166 bp MSTRG.53703.74 MSTRG.53703 |
BART1_0-u53703.075 | 3536 | 3536 bp MSTRG.53703.75 MSTRG.53703 |
BART1_0-u53703.076 | 3457 | 3457 bp MSTRG.53703.76 MSTRG.53703 |
BART1_0-u53703.077 | 4069 | 4069 bp MSTRG.53703.77 MSTRG.53703 |
BART1_0-u53703.078 | 3375 | 3375 bp MSTRG.53703.78 MSTRG.53703 |
BART1_0-u53703.079 | 3278 | 3278 bp MSTRG.53703.79 MSTRG.53703 |
BART1_0-u53703.080 | 3297 | 3297 bp MSTRG.53703.80 MSTRG.53703 |
BART1_0-u53703.081 | 4176 | 4176 bp MSTRG.53703.81 MSTRG.53703 |
BART1_0-u53703.082 | 3208 | 3208 bp MSTRG.53703.82 MSTRG.53703 |
BART1_0-u53703.083 | 5620 | 5620 bp MSTRG.53703.83 MSTRG.53703 |
BART1_0-u53703.084 | 4225 | 4225 bp MSTRG.53703.84 MSTRG.53703 |
BART1_0-u53703.085 | 4143 | 4143 bp MSTRG.53703.85 MSTRG.53703 |
BART1_0-u53703.086 | 3044 | 3044 bp MSTRG.53703.86 MSTRG.53703 |
BART1_0-u53703.087 | 4136 | 4136 bp MSTRG.53703.87 MSTRG.53703 |
BART1_0-u53703.088 | 3263 | 3263 bp MSTRG.53703.88 MSTRG.53703 |
BART1_0-u53703.089 | 3254 | 3254 bp MSTRG.53703.89 MSTRG.53703 |
BART1_0-u53703.090 | 3362 | 3362 bp MSTRG.53703.90 MSTRG.53703 |
BART1_0-u53703.091 | 5674 | 5674 bp MSTRG.53703.91 MSTRG.53703 |
BART1_0-u53703.092 | 3374 | 3374 bp MSTRG.53703.92 MSTRG.53703 |
BART1_0-u53703.093 | 3172 | 3172 bp MSTRG.53703.93 MSTRG.53703 |
BART1_0-u53703.094 | 3271 | 3271 bp MSTRG.53703.94 MSTRG.53703 |
BART1_0-u53703.095 | 4047 | 4047 bp MSTRG.53703.95 MSTRG.53703 |
BART1_0-u53703.096 | 3125 | 3125 bp MSTRG.53703.96 MSTRG.53703 |
BART1_0-u53703.097 | 3205 | 3205 bp MSTRG.53703.97 MSTRG.53703 |
BART1_0-u53703.098 | 3346 | 3346 bp MSTRG.53703.98 MSTRG.53703 |
BART1_0-u53703.099 | 3158 | 3158 bp MSTRG.53703.99 MSTRG.53703 |
BART1_0-u53703.100 | 3371 | 3371 bp MSTRG.53703.100 MSTRG.53703 |
BART1_0-u53703.101 | 4025 | 4025 bp MSTRG.53703.101 MSTRG.53703 |
BART1_0-u53703.102 | 3150 | 3150 bp MSTRG.53703.102 MSTRG.53703 |
BART1_0-u53703.103 | 4009 | 4009 bp MSTRG.53703.103 MSTRG.53703 |
BART1_0-u53703.104 | 3014 | 3014 bp MSTRG.53703.104 MSTRG.53703 |
BART1_0-u53703.105 | 3223 | 3223 bp MSTRG.53703.105 MSTRG.53703 |
BART1_0-u53703.106 | 4136 | 4136 bp MSTRG.53703.106 MSTRG.53703 |
BART1_0-u53703.107 | 4041 | 4041 bp MSTRG.53703.107 MSTRG.53703 |
BART1_0-u53703.108 | 4108 | 4108 bp MSTRG.53703.108 MSTRG.53703 |
BART1_0-u53703.109 | 3422 | 3422 bp MSTRG.53703.109 MSTRG.53703 |
BART1_0-u53703.110 | 3143 | 3143 bp MSTRG.53703.110 MSTRG.53703 |
BART1_0-u53703.111 | 4062 | 4062 bp MSTRG.53703.111 MSTRG.53703 |
BART1_0-u53703.112 | 3309 | 3309 bp MSTRG.53703.112 MSTRG.53703 |
BART1_0-u53703.113 | 3298 | 3298 bp MSTRG.53703.113 MSTRG.53703 |
BART1_0-u53703.114 | 3317 | 3317 bp MSTRG.53703.114 MSTRG.53703 |
BART1_0-u53703.115 | 3314 | 3314 bp MSTRG.53703.115 MSTRG.53703 |
BART1_0-u53703.116 | 4024 | 4024 bp MSTRG.53703.116 MSTRG.53703 |
BART1_0-u53703.117 | 3077 | 3077 bp MSTRG.53703.117 MSTRG.53703 |
BART1_0-u53703.118 | 3186 | 3186 bp MSTRG.53703.118 MSTRG.53703 |
BART1_0-u53703.119 | 2799 | 2799 bp MSTRG.53703.119 MSTRG.53703 |
BART1_0-u53703.120 | 2125 | 2125 bp MSTRG.53703.120 MSTRG.53703 |
BART1_0-u53703.121 | 1673 | 1673 bp MSTRG.53703.121 MSTRG.53703 |
BART1_0-u53703.122 | 1592 | 1592 bp MSTRG.53703.122 MSTRG.53703 |
BART1_0-u53703.123 | 1471 | 1471 bp MSTRG.53703.123 MSTRG.53703 |
BART1_0-u53703.124 | 2391 | 2391 bp MSTRG.53703.124 MSTRG.53703 |
BART1_0-u53703.125 | 1416 | 1416 bp MSTRG.53703.125 MSTRG.53703 |
BART1_0-u53703.126 | 1572 | 1572 bp MSTRG.53703.126 MSTRG.53703 |
Exon Structure of BART1_0-u53703
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g06110.2 | +1 | 0.0 | 549 | 369/539 (68%) | protein|MYB family transcription factor, putative, expressed |
TAIR PP10 | AT1G01060 @ ARAPORT AT1G01060.4 @ TAIR |
+1 | 4e-32 | 135 | 60/72 (83%) | Symbols: LHY, LHY1 | Homeodomain-like superfamily protein | chr1:33992-37061 REVERSE LENGTH=644 |
BRACH PP3 | Bradi3g16515.1.p | +1 | 0.0 | 597 | 393/532 (74%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0009651 | response to salt stress |
GO:0009753 | response to jasmonic acid |
GO:0046686 | response to cadmium ion |
GO:0043433 | negative regulation of DNA-binding transcription factor activity |
GO:0009751 | response to salicylic acid |
GO:0007623 | circadian rhythm |
GO:0042754 | negative regulation of circadian rhythm |
GO:0009723 | response to ethylene |
GO:0009733 | response to auxin |
GO:0005634 | nucleus |
GO:0003677 | DNA binding |
GO:0009739 | response to gibberellin |
GO:0001067 | regulatory region nucleic acid binding |
GO:0009409 | response to cold |
GO:0003700 | DNA-binding transcription factor activity |
GO:0009737 | response to abscisic acid |
GO:0048574 | long-day photoperiodism, flowering |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons