- Transcript BART1_0-u53703.042
- Transcript IDBART1_0-u53703.042
- Gene IDBART1_0-u53703
Barley RTD
Exon Structure of BART1_0-u53703.042
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385863972 | 385861682 | - |
| chr7H | 2 | 385865991 | 385864078 | - |
| chr7H | 3 | 385866338 | 385866227 | - |
| chr7H | 4 | 385866611 | 385866429 | - |
| chr7H | 5 | 385867084 | 385867000 | - |
| chr7H | 6 | 385867226 | 385867200 | - |
| chr7H | 7 | 385867533 | 385867389 | - |
| chr7H | 8 | 385872202 | 385872147 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.453197 | 0.0948491 |
| morex | ETI | 0.986283 | 0.86294 | 0.0986634 |
| morex | LEA | 3.11162 | 3.21692 | 1.95155 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.575625 | 0.853022 |
| morex | ROO2 | 0.275863 | 0.443786 | 0.291774 |
| morex | NOD | 5.15316 | 2.7073 | 4.51628 |
| morex | RAC | 0 | 0 | 0.033325 |
| morex | INF1 | 1.24685 | 1.08318 | 0.79533 |
| morex | INF2 | 0.918088 | 0.585585 | 1.06202 |
| morex | CAR5 | 0.498472 | 0.370692 | 0.0801885 |
| morex | CAR15 | 0.0842257 | 0.139268 | 0 |
| morex | LEM | 0.807078 | 0.52471 | 0.0706494 |
| morex | LOD | 0 | 0 | 0.342781 |
| morex | PAL | 0 | 0 | 0.0270271 |
| morex | SEN | 0.225427 | 0.422699 | 0.0583361 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +3 | 0.0 | 549 | 369/539 (68%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g16515.1.p | +3 | 0.0 | 597 | 393/532 (74%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4813 bp)
>BART1_0-u53703.042 4813 150831_barley_pseudomolecules GCGGGCTGGGCGGGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTGCTCGCCCGAGGTGT AGGAAGTGTTAAGGGGATACATAATCGGTTTTGAGCTGCGAGGCCCTGCATTTCTTCTGC CTGCTGTTTGATTCACGGCCCACTCTTTTCCTTCTATCCATTCAAGCAAAGTACTGGAAT TTCTGAGCCCAATTTATTCAGGTCATGGGATTTGTTTGTCCTTAGCAGAGTTGAAGATAA AGAGAGGAAGGCTAAACTCTGCTGATCCGGTTCATGCGAGCAATGAGCCAACTGCAGTAG AGGTTTACAGTAGAGAGGTTTAGGGGGAGGTATGAGATACTACTCGCGTCAGGTCCAGCG TTTGGCTGGAGACACAGAAGGAGGAGTGCTGTTGTTTGTAGACGCCCTCAACTCCAAGTA ACAAAGCGACCAGTTGTCAGCACTTCCTTTTGTTTTCGCATTTCCCTGGAATTGGAGATG GAGATAAATTCTTCGGGTGCGAAAGCCGTACACAATAACAAAACAGCGGGAGCGGTGGAC TGAGGCAGAGCACAAACGGTTCCTTGAAGCCCTCAAACTGTATGGCAGAGCTTGGCAGCG CATAGAAGAGCATGTTGGGACAAAGACGGCCGTGCAAATCAGAAGCCATGCTCAGAAGTT CTTCACAAAGGTTATTTTTTCTATCTTATTGGCTAGTACCCTTGTTTGGTTTACTGCTAT ACCCTTCGTTTTCGGGCTGTTTCATCTTTATTGTTAGTGATAAAATGAAGACTTGCGCAT GCTTCATAACTTTTATGTCTTTATTTTACTGAAGTATTTTCATTTTTTCTTTCTTTGTAC AGTTTGTTCTGCAGTGCTGAGCATGATGAAAGATTCGTTTCCTTTGAATATCATGAGAAC CATGCTTTATCTAATTGTTGCCCTGCTGATTGATTAAAAGATCAAATTAAAGCATGTTAA AATGGATGAAACATGCTAGAAAGTCTTTGCTGATTGTAAGCAATGAGTAATGTTGCAGAG AAGATGATGTTGAACAACTCTGATTCTCTCATTGATTCATTTTACATATCCATGCTGTTA TTGAACATACATATGACTAAGAAAACATTATGGTACTAGTTAAATTTACATAGAGAGTCA ATATAATACATAATGTGAAATAGGATATCTGAATGCACTCAAGTGAACTACAGGAAATTC CTTAGGAATTGTATGGTAAATATGCTAACATTTGTTGCATTTCATTATAGCCCCCATCAA CGTAGGTAAACACTTTATCTAACATGTTTCACTATCAACATTGTGTAAATGAGTCCATTT CATTTTCTAAATCATGATATTTCTTCCGCAGAAGTACACAATGGCATGAACAAAATTTAT CTTCTTTCTCCCCTTTTTGTCCTTGCTCTCTTCTCTGCTTTCTGTTCTTTGCTGCTTGTC CTATTTTTTTAGGGGCTGCATACAGCCACATGGTGGAGGCTACATTGCCAATTTGCCATC ATGTTGTAACATGCAACAGACTGTTGCCTTGTTAGGATTGCAGCCTCATCCTCTCAGAGG TTTCTTTGCCAGACCCATGGAGGAGGGAGGAGGCTAAGGCTAGTCTTTTCTTCCCTTGTT TTGACCACGATGGTTTCTGGGTCCTCAAATTTCATACTTTGCTCACCAGCCATTACCAAT CTGACCTTGCTCAATATAGCAGGTTGGTTGTTGGGATGGACAGCTCTACCCTATTGTACA TATACATATATATATAGTAAATGACGCAACTAACGGTTCAGTACACCAACTTAGCTCATA GTTACTCGCCAATAAGTTTGTAAAAGCTCAGGGTGGAAACTGTCAGCCTTCAAGTTCAAT CTAACCAATAGTTTAAAGGTTTTGTGCATCGGTTGATGGAGAGGCTGGAGAGATGTCTCT TCCATAATCCAAAAACAATTTTACAGTGCTATTTTCTTACCTTTTATGTGGAATAGAGAA GAGCCAGTAGAGTGAAAAAGAAACCACCATCCACTCTTTCAGTCCTCCACCCGCTTGAGG GTTTAGGCTGTAGAATGCTGTATTTGTCAGGGTTAGGATACCGGAACTGCCCCAAATTCC CATTGTAGGCGGTTCTGGTTTCTTGCAGAACCTGGCCAGTTAGTCTGGTTGCCCAAAAAT GCCTTATTTTCTGGTGCTCTGAATCTTCATTTTCATTTTGCAGATTTCAAATTGAAGATA TAAATTACAGACCTATGCAACAATAGATAGTTCAATTTTCCAATTCTAGTTTATCACCAC TGTCTGTCTGTATCTAACTATTTGGGAAATTGCAGTTGGAAAAGGAAGCTATCAACAATG GTACTTCTCCAGGACAAGCTCATGATATAGACATACCTCCACCACGGCCTAAAAGAAAAC CTAACTGTCCATATCCTCGAAAAGGTTGTCTCAGCTCTGAGACACCCACCAGAGAAGTTC CAAAATCAAGTGTTAGCTTGAGCAATAGCAATTCACAAATGGAAAGCAATGGAACTCTTC AGGTCACCAGCACTCAGAAACTTCAAAGGAAGGAGTTGTCTGGAAACGGCAGTTGCTCAG AAGTTATTAATATCTTTAGAGAAGCACCATCTGCCTCATTTTCTTCCTCTAACAAGAGCT CTTCAAATCATGGTGTCTCTGGGGGAATTGAACCGACTAAAACAGAAATCAAAGATATGG CAGCCATGGAAAGGAAATCTACTTCCGTTGATGTGGCGAAGGATGTAAAAGATATTAATG ACCAGGAAATGGAAAGGAACAACAGAGTCCACATCAGTTCTAAATATGACCGTTCTCATG AAGATTGTTTGGATAGCTCAATGAAACACATGCAGTTGAAGCCAAATACTGTGGAGACAA CATACACGGGTCAACATGTTGCAAGTGCTCCACTCTACCAAATGAATAAGACTGGGGCAA CTGGCACTCCAGACCCTGGAACTGAAGGAAGTCATCCTGATCAAACGAATGATCAAGTGG GAGGAGCTAATGGAAGTATGGACTGCATCCATCCAACACTTCCCGTGGATCTAAAATTTG GCAGCAGCTCCACAGCGCAGCCCTTTCCCCACAACTATTCAGGCTTTGCACCAACGATGC AATGCCAGTGCAACCAAGATGCCTACAGGTCATCTGTTGATATGTCGTCCACCTTCTCCA ACATGCTCGTTTCCACATTGTTATCAAACCCCACAGTACATGCAGCTGCAAGGCTTGCAG CATCATACTGGCCAGCAGCAGACAGCAACATCCCTGTCGATCCAAATCAAGGAATTTTTG CTCAGAATGCTCAAGGAAGACATATTGTTTCTCCTCCAAGCATGGCTTCTGTGGTAGCAG CTACAGTTGCTGCGGCTTCGGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTGCTC CCCCCATGGCTTTTCCATTTGTCCCAGTTCCTACCGCTTCCTTTCCCACAGCGGATGTCC AGCGAGCTACAGAGAACTGCCCAGTGGACAACGCACCAAAGGAATGCCAAGTAGCTCAGG GGCAAGGTCAACCTGAAGCTATGATAGTTGTAGCATCTTCTGGGTCCGGCGAGAGTGGAA AAGGAGAGGTGTGTCCTCACACTGAGTTAAATATATCTCTGGCTGATAAAGCTGAGACAA CACCTGCCACAGGAGCTGAAACAAGTGATGCTTTGGGCAACAAGAAGAAGCAGGATCGCT CTTCATGTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGCAGAACATGTTCCTGAGA ACCAAGATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAGTAATTCTTCAGCTGGTG ACATGAACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGATTCATGGAAGGAAGTTT CCGAGGAGGTTGTAGTCTACCAGCATTGCCGAATTTCATTTCTATGTTACTCTTGAGCAT CTATCACTGCTTTTCTAATTCACATTTCTGCTGTCAGGGTCGTATGGCTTTCGATAAACT GTTCAGTAGAGGAAAGCTTCCCCAAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGT GGTTCCCAGAGGGGAGCAAGATGAAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGC TGCAGTTATGGACCATGAACTTGACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGA ATTGTCACACCTGAATATGAAATCCCGCCGGACAGGCTTCAAACCTTACAAGAGGTGCTC GGTGGAAGCAAAGGAGAATAGGGTGCCGGCTGCTGACGAGGTTGGTACCAAAAGGATTCG CCTTGACAGCGAACCCTCCACGTGATTTACTTCCCACGACATGATTACCAGCCTGCACAA GTAGTGTATTTTCAAGAAATTGCGGTATTTACATCTAAGCTACTATAGGACTTGCCAGTC CTTGCAATGCAGTGTTTCACAGAACTCAATTTGTTATGTGTTGTATGTTAATGCTTGCCG AGCAGCCCTTTTAGACTGTCAATTAAGCATTAAGCACCTATGCATGCTACTTTATTGGTA AAAAAGTAATTCTGCTTATTTTTCTGTGATGAAGGATAATACTTGTAATTTTGCTTCATT TTACTGGATCATGTAGATTTAATTCCCGAAGGGAGAGCATGATCGCCTTGTGTTATTTTT ATTTTCTTGAGAAAAATATTGTGCTATGTATATGCACCCTAGATTTGAAGTTTCTTGGAT GGTCCAGCTTTCTCAAACAGTGTACTTCTTTTAATTTAAAATAAAATATATGGCTTGTAT CTTTAATATCGAA
Protein Sequence (485 aa)
>BART1_0-u53703.042 485 150831_barley_pseudomolecules MESNGTLQVTSTQKLQRKELSGNGSCSEVINIFREAPSASFSSSNKSSSNHGVSGGIEPT KTEIKDMAAMERKSTSVDVAKDVKDINDQEMERNNRVHISSKYDRSHEDCLDSSMKHMQL KPNTVETTYTGQHVASAPLYQMNKTGATGTPDPGTEGSHPDQTNDQVGGANGSMDCIHPT LPVDLKFGSSSTAQPFPHNYSGFAPTMQCQCNQDAYRSSVDMSSTFSNMLVSTLLSNPTV HAAARLAASYWPAADSNIPVDPNQGIFAQNAQGRHIVSPPSMASVVAATVAAASAWWATQ GLLPLFAPPMAFPFVPVPTASFPTADVQRATENCPVDNAPKECQVAQGQGQPEAMIVVAS SGSGESGKGEVCPHTELNISLADKAETTPATGAETSDALGNKKKQDRSSCGSNTPSSSDV EAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVSEEVVVYQHCRIS FLCYS