- Transcript BART1_0-u53703.024
- Transcript IDBART1_0-u53703.024
- Gene IDBART1_0-u53703
Barley RTD
Exon Structure of BART1_0-u53703.024
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385862497 | 385861657 | - |
| chr7H | 2 | 385863972 | 385862587 | - |
| chr7H | 3 | 385864284 | 385864078 | - |
| chr7H | 4 | 385865991 | 385865930 | - |
| chr7H | 5 | 385866338 | 385866227 | - |
| chr7H | 6 | 385866611 | 385866409 | - |
| chr7H | 7 | 385867084 | 385867000 | - |
| chr7H | 8 | 385867226 | 385867200 | - |
| chr7H | 9 | 385867533 | 385867389 | - |
| chr7H | 10 | 385871248 | 385871179 | - |
| chr7H | 11 | 385871359 | 385871331 | - |
| chr7H | 12 | 385872217 | 385872147 | - |
| chr7H | 13 | 385872393 | 385872313 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0.00868709 | 0 |
| morex | LEA | 0.520092 | 0 | 0 |
| morex | EPI | 0.386314 | 0 | 0.068979 |
| morex | ROO | 0 | 0.0794576 | 0 |
| morex | ROO2 | 0 | 0.104485 | 0.000000210282 |
| morex | NOD | 0 | 0.4908 | 0.542771 |
| morex | RAC | 0.0685164 | 0.0375766 | 0 |
| morex | INF1 | 0 | 0 | 0.000176441 |
| morex | INF2 | 0.257926 | 0 | 0.172565 |
| morex | CAR5 | 0.847967 | 0.235114 | 0.336421 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.0000344649 | 1.18776 | 0.270917 |
| morex | LOD | 0.176568 | 0 | 0.953221 |
| morex | PAL | 0.116586 | 0.0821301 | 0.0185195 |
| morex | SEN | 0.306064 | 0.618911 | 0.406591 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +1 | 0.0 | 878 | 526/725 (73%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT2G46830 @ ARAPORT AT2G46830.1 @ TAIR |
+1 | 5e-38 | 152 | 71/91 (78%) | Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608 |
| BRACH PP3 | Bradi3g16515.1.p | +1 | 0.0 | 936 | 559/722 (77%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3319 bp)
>BART1_0-u53703.024 3319 150831_barley_pseudomolecules TCCCGGTTGGCTTCGTCCGGAAGCATCGGCCGGTGGCGGCAGAGAGAGGAGCTCCTGCGC CCGGCGCGGCGGTCGGTTGAGGCCGCCGCGCGGAGGGCGGGCTGGGCGGGCGACGTGGCC ACCGGGGTCAGCTTGCTTGCTGCTCGCCCGAGCAATCCTAAAGCAACATATGCATATTCA GGCATACTATGTTGTCCTTAAATAACGTGGTTCAGGTTGTGGGAGATAAACTCATGGATG CTCCTTCAAAGGTGTAGGAAGTGTTAAGGGGATACATAATCGGTTTTGAGCTGCGAGGCC CTGCATTTCTTCTGCCTGCTGTTTGATTCACGGCCCACTCTTTTCCTTCTATCCATTCAA GCAAAGTACTGGAATTTCTGAGCCCAATTTATTCAGGTCATGGGATTTGTTTGTCCTTAG CAGAGTTGAAGATAAAGAGAGGAAGGCTAAACTCTGCTGATCCGGTTCATGCGAGCAATG AGCCAACTGCAGTAGAGGTTTACAGTAGAGAGGTTTAGGGGGAGGTATGAGATACTACTC GCGTCAGGTCCAGCGTTTGGCTGGAGACACAGAAGGAGGAGTGCTGTTGTTTGTAGACGC CCTCAACTCCAAGTAACAAAGCGACCAGTTGTCAGCACTTCCTTTTGTTTTCGCATTTCC CTGGAATTGGAGATGGAGATAAATTCTTCGGGTGAGGAAACGGTGATAAAGGTGCGAAAG CCGTACACAATAACAAAACAGCGGGAGCGGTGGACTGAGGCAGAGCACAAACGGTTCCTT GAAGCCCTCAAACTGTATGGCAGAGCTTGGCAGCGCATAGAAGAGCATGTTGGGACAAAG ACGGCCGTGCAAATCAGAAGCCATGCTCAGAAGTTCTTCACAAAGTTGGAAAAGGAAGCT ATCAACAATGGTACTTCTCCAGGACAAGCTCATGATATAGACATACCTCCACCACGGCCT AAAAGAAAACCTAACTGTCCATATCCTCGAAAAGGTTGTCTCAGCTCTGAGACACCCACC AGAGAAGTTCCAAAATCAAGTGTTAGCTTGAGCAATAGCAATTCACAAATGGAAAGCAAT GGAACTCTTCAGGTCACCAGCACTCAGAAACTTCAAAGGAAGGAGTTGTCTGGAAACGGC AGTTGCTCAGAAGTTATTAATATCTTTAGAGAAGCACCATCTGCCTCATTTTCTTCCTCT AACAAGAGCTCTTCAAATCATGGTGTCTCTGGGGGAATTGAACCGACTAAAACAGAAATC AAAGATATGGCAGCCATGGAAAGGAAATCTACTTCCGTTGATGTGGCGAAGGATGTAAAA GATATTAATGACCAGGAAATGGAAAGGAACAACAGAGTCCACATCAGTTCTAAATATGAC CGTTCTCATGAAGATTGTTTGGATAGCTCAATGAAACACATGCAGTTGAAGCCAAATACT GTGGAGACAACATACACGGGTCAACATGTTGCAAGTGCTCCACTCTACCAAATGAATAAG ACTGGGGCAACTGGCACTCCAGACCCTGGAACTGAAGGAAGTCATCCTGATCAAACGAAT GATCAAGTGGGAGGAGCTAATGGAAGTATGGACTGCATCCATCCAACACTTCCCGTGGAT CTAAAATTTGGCAGCAGCTCCACAGCGCAGCCCTTTCCCCACAACTATTCAGGCTTTGCA CCAACGATGCAATGCCAGTGCAACCAAGATGCCTACAGGTCATCTGTTGATATGTCGTCC ACCTTCTCCAACATGCTCGTTTCCACATTGTTATCAAACCCCACAGTACATGCAGCTGCA AGGCTTGCAGCATCATACTGGCCAGCAGCAGACAGCAACATCCCTGTCGATCCAAATCAA GGAATTTTTGCTCAGAATGCTCAAGGAAGACATATTGTTTCTCCTCCAAGCATGGCTTCT GTGGTAGCAGCTACAGTTGCTGCGGCTTCGGCATGGTGGGCAACACAAGGTCTTCTCCCT CTTTTTGCTCCCCCCATGGCTTTTCCATTTGTCCCAGTTCCTACCGCTTCCTTTCCCACA GCGGATGTCCAGCGAGCTACAGAGAACTGCCCAGTGGACAACGCACCAAAGGAATGCCAA GTAGCTCAGGGGCAAGGTCAACCTGAAGCTATGATAGTTGTAGCATCTTCTGGGTCCGGC GAGAGTGGAAAAGGAGAGGTGTGTCCTCACACTGAGTTAAATATATCTCTGGCTGATAAA GCTGAGACAACACCTGCCACAGGAGCTGAAACAAGTGATGCTTTGGGCAACAAGAAGAAG CAGGATCGCTCTTCATGTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGCAGAACAT GTTCCTGAGAACCAAGATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAGTAATTCT TCAGCTGGTGACATGAACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGATTCATGG AAGGAAGTTTCCGAGGAGGGTCGTATGGCTTTCGATAAACTGTTCAGTAGAGGAAAGCTT CCCCAAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGTGGTTCCCAGAGGGGAGCAA GATGAAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGCTGCAGTTATGGACCATGAA CTTGACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGAATTGTCACACCTGAATATG AAATCCCGCCGGACAGGCTTCAAACCTTACAAGAGGTGCTCGGTGGAAGCAAAGGAGAAT AGGGTGCCGGCTGCTGACGAGGTTGGTACCAAAAGGATTCGCCTTGACAGCGAACCCTCC ACGTGATTTACTTCCCACGACATGATTACCAGCCTGCACAAGTAGTGTATTTTCAAGAAA TTGCGGTATTTACATCTAAGCTACTATAGGACTTGCCAGTCCTTGCAATGCAGTGTTTCA CAGAACTCAATTTGTTATGTGTTGTATGTTAATGCTTGCCGAGCAGCCCTTTTAGACTGT CAATTAAGCATTAAGCACCTATGCATGCTACTTTATTGGTAAAAAAGTAATTCTGCTTAT TTTTCTGTGATGAAGGATAATACTTGTAATTTTGCTTCATTTTACTGGATCATGTAGATT TAATTCCCGAAGGGAGAGCATGATCGCCTTGTGTTATTTTTATTTTCTTGAGAAAAATAT TGTGCTATGTATATGCACCCTAGATTTGAAGTTTCTTGGATGGTCCAGCTTTCTCAAACA GTGTACTTCTTTTAATTTAAAATAAAATATATGGCTTGTATCTTTAATATCGAAGGTACT CCCTCTATAAAAAGTATAA
Protein Sequence (717 aa)
>BART1_0-u53703.024 717 150831_barley_pseudomolecules MEINSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNCPYPRKGCLSSETPTREVP KSSVSLSNSNSQMESNGTLQVTSTQKLQRKELSGNGSCSEVINIFREAPSASFSSSNKSS SNHGVSGGIEPTKTEIKDMAAMERKSTSVDVAKDVKDINDQEMERNNRVHISSKYDRSHE DCLDSSMKHMQLKPNTVETTYTGQHVASAPLYQMNKTGATGTPDPGTEGSHPDQTNDQVG GANGSMDCIHPTLPVDLKFGSSSTAQPFPHNYSGFAPTMQCQCNQDAYRSSVDMSSTFSN MLVSTLLSNPTVHAAARLAASYWPAADSNIPVDPNQGIFAQNAQGRHIVSPPSMASVVAA TVAAASAWWATQGLLPLFAPPMAFPFVPVPTASFPTADVQRATENCPVDNAPKECQVAQG QGQPEAMIVVASSGSGESGKGEVCPHTELNISLADKAETTPATGAETSDALGNKKKQDRS SCGSNTPSSSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVS EEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNKSAAVMDHELDTL VGPRASFPIELSHLNMKSRRTGFKPYKRCSVEAKENRVPAADEVGTKRIRLDSEPST