- Transcript BART1_0-u53703.020
- Transcript IDBART1_0-u53703.020
- Gene IDBART1_0-u53703
Barley RTD
Exon Structure of BART1_0-u53703.020
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385862497 | 385861654 | - |
| chr7H | 2 | 385863972 | 385862587 | - |
| chr7H | 3 | 385864284 | 385864078 | - |
| chr7H | 4 | 385865991 | 385865930 | - |
| chr7H | 5 | 385866338 | 385866227 | - |
| chr7H | 6 | 385866611 | 385866409 | - |
| chr7H | 7 | 385867084 | 385867000 | - |
| chr7H | 8 | 385867226 | 385867200 | - |
| chr7H | 9 | 385867533 | 385867389 | - |
| chr7H | 10 | 385871248 | 385871179 | - |
| chr7H | 11 | 385872217 | 385872147 | - |
| chr7H | 12 | 385872393 | 385872313 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.154385 | 0 |
| morex | ETI | 0.394028 | 0.388896 | 0.19914 |
| morex | LEA | 0.381626 | 0.293493 | 0.38213 |
| morex | EPI | 0 | 0.0796282 | 0 |
| morex | ROO | 0 | 0.0466837 | 0 |
| morex | ROO2 | 0 | 0.1129 | 0.0304803 |
| morex | NOD | 0.245223 | 0.583167 | 0.621118 |
| morex | RAC | 0 | 0.0386034 | 0 |
| morex | INF1 | 0.321182 | 0.329247 | 0.292354 |
| morex | INF2 | 0.0000000428115 | 0.23214 | 0.0766387 |
| morex | CAR5 | 0.0864725 | 0.160942 | 0.227238 |
| morex | CAR15 | 0.0512389 | 0 | 0 |
| morex | LEM | 1.58654 | 1.36876 | 0.246148 |
| morex | LOD | 0.0430396 | 0 | 0.770821 |
| morex | PAL | 0 | 0.0421276 | 0.0732011 |
| morex | SEN | 0.323757 | 0.0991318 | 0.0753665 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +2 | 0.0 | 878 | 526/725 (73%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT2G46830 @ ARAPORT AT2G46830.1 @ TAIR |
+2 | 4e-38 | 152 | 71/91 (78%) | Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608 |
| BRACH PP3 | Bradi3g16515.1.p | +2 | 0.0 | 936 | 559/722 (77%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3293 bp)
>BART1_0-u53703.020 3293 150831_barley_pseudomolecules TCCCGGTTGGCTTCGTCCGGAAGCATCGGCCGGTGGCGGCAGAGAGAGGAGCTCCTGCGC CCGGCGCGGCGGTCGGTTGAGGCCGCCGCGCGGAGGGCGGGCTGGGCGGGCGACGTGGCC ACCGGGGTCAGCTTGCTTGCTGCTCGCCCGAGGCATACTATGTTGTCCTTAAATAACGTG GTTCAGGTTGTGGGAGATAAACTCATGGATGCTCCTTCAAAGGTGTAGGAAGTGTTAAGG GGATACATAATCGGTTTTGAGCTGCGAGGCCCTGCATTTCTTCTGCCTGCTGTTTGATTC ACGGCCCACTCTTTTCCTTCTATCCATTCAAGCAAAGTACTGGAATTTCTGAGCCCAATT TATTCAGGTCATGGGATTTGTTTGTCCTTAGCAGAGTTGAAGATAAAGAGAGGAAGGCTA AACTCTGCTGATCCGGTTCATGCGAGCAATGAGCCAACTGCAGTAGAGGTTTACAGTAGA GAGGTTTAGGGGGAGGTATGAGATACTACTCGCGTCAGGTCCAGCGTTTGGCTGGAGACA CAGAAGGAGGAGTGCTGTTGTTTGTAGACGCCCTCAACTCCAAGTAACAAAGCGACCAGT TGTCAGCACTTCCTTTTGTTTTCGCATTTCCCTGGAATTGGAGATGGAGATAAATTCTTC GGGTGAGGAAACGGTGATAAAGGTGCGAAAGCCGTACACAATAACAAAACAGCGGGAGCG GTGGACTGAGGCAGAGCACAAACGGTTCCTTGAAGCCCTCAAACTGTATGGCAGAGCTTG GCAGCGCATAGAAGAGCATGTTGGGACAAAGACGGCCGTGCAAATCAGAAGCCATGCTCA GAAGTTCTTCACAAAGTTGGAAAAGGAAGCTATCAACAATGGTACTTCTCCAGGACAAGC TCATGATATAGACATACCTCCACCACGGCCTAAAAGAAAACCTAACTGTCCATATCCTCG AAAAGGTTGTCTCAGCTCTGAGACACCCACCAGAGAAGTTCCAAAATCAAGTGTTAGCTT GAGCAATAGCAATTCACAAATGGAAAGCAATGGAACTCTTCAGGTCACCAGCACTCAGAA ACTTCAAAGGAAGGAGTTGTCTGGAAACGGCAGTTGCTCAGAAGTTATTAATATCTTTAG AGAAGCACCATCTGCCTCATTTTCTTCCTCTAACAAGAGCTCTTCAAATCATGGTGTCTC TGGGGGAATTGAACCGACTAAAACAGAAATCAAAGATATGGCAGCCATGGAAAGGAAATC TACTTCCGTTGATGTGGCGAAGGATGTAAAAGATATTAATGACCAGGAAATGGAAAGGAA CAACAGAGTCCACATCAGTTCTAAATATGACCGTTCTCATGAAGATTGTTTGGATAGCTC AATGAAACACATGCAGTTGAAGCCAAATACTGTGGAGACAACATACACGGGTCAACATGT TGCAAGTGCTCCACTCTACCAAATGAATAAGACTGGGGCAACTGGCACTCCAGACCCTGG AACTGAAGGAAGTCATCCTGATCAAACGAATGATCAAGTGGGAGGAGCTAATGGAAGTAT GGACTGCATCCATCCAACACTTCCCGTGGATCTAAAATTTGGCAGCAGCTCCACAGCGCA GCCCTTTCCCCACAACTATTCAGGCTTTGCACCAACGATGCAATGCCAGTGCAACCAAGA TGCCTACAGGTCATCTGTTGATATGTCGTCCACCTTCTCCAACATGCTCGTTTCCACATT GTTATCAAACCCCACAGTACATGCAGCTGCAAGGCTTGCAGCATCATACTGGCCAGCAGC AGACAGCAACATCCCTGTCGATCCAAATCAAGGAATTTTTGCTCAGAATGCTCAAGGAAG ACATATTGTTTCTCCTCCAAGCATGGCTTCTGTGGTAGCAGCTACAGTTGCTGCGGCTTC GGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTGCTCCCCCCATGGCTTTTCCATT TGTCCCAGTTCCTACCGCTTCCTTTCCCACAGCGGATGTCCAGCGAGCTACAGAGAACTG CCCAGTGGACAACGCACCAAAGGAATGCCAAGTAGCTCAGGGGCAAGGTCAACCTGAAGC TATGATAGTTGTAGCATCTTCTGGGTCCGGCGAGAGTGGAAAAGGAGAGGTGTGTCCTCA CACTGAGTTAAATATATCTCTGGCTGATAAAGCTGAGACAACACCTGCCACAGGAGCTGA AACAAGTGATGCTTTGGGCAACAAGAAGAAGCAGGATCGCTCTTCATGTGGTTCCAACAC ACCATCAAGTAGTGATGTAGAGGCAGAACATGTTCCTGAGAACCAAGATCAAGCTAACGA CAAGACACAGCAAGCATGTTGCAGTAATTCTTCAGCTGGTGACATGAACCATCGCAGGTT TAGGAACATTTCAAGCACGAATGATTCATGGAAGGAAGTTTCCGAGGAGGGTCGTATGGC TTTCGATAAACTGTTCAGTAGAGGAAAGCTTCCCCAAAGCTTTTCTCCTCCACAAGCAGA AGGATTGAAGGTGGTTCCCAGAGGGGAGCAAGATGAAGCTACTACGGTGACGGTCGACCT CAACAAGAGTGCTGCAGTTATGGACCATGAACTTGACACATTGGTTGGGCCAAGAGCTTC CTTTCCCATTGAATTGTCACACCTGAATATGAAATCCCGCCGGACAGGCTTCAAACCTTA CAAGAGGTGCTCGGTGGAAGCAAAGGAGAATAGGGTGCCGGCTGCTGACGAGGTTGGTAC CAAAAGGATTCGCCTTGACAGCGAACCCTCCACGTGATTTACTTCCCACGACATGATTAC CAGCCTGCACAAGTAGTGTATTTTCAAGAAATTGCGGTATTTACATCTAAGCTACTATAG GACTTGCCAGTCCTTGCAATGCAGTGTTTCACAGAACTCAATTTGTTATGTGTTGTATGT TAATGCTTGCCGAGCAGCCCTTTTAGACTGTCAATTAAGCATTAAGCACCTATGCATGCT ACTTTATTGGTAAAAAAGTAATTCTGCTTATTTTTCTGTGATGAAGGATAATACTTGTAA TTTTGCTTCATTTTACTGGATCATGTAGATTTAATTCCCGAAGGGAGAGCATGATCGCCT TGTGTTATTTTTATTTTCTTGAGAAAAATATTGTGCTATGTATATGCACCCTAGATTTGA AGTTTCTTGGATGGTCCAGCTTTCTCAAACAGTGTACTTCTTTTAATTTAAAATAAAATA TATGGCTTGTATCTTTAATATCGAAGGTACTCCCTCTATAAAAAGTATAAAAG
Protein Sequence (717 aa)
>BART1_0-u53703.020 717 150831_barley_pseudomolecules MEINSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNCPYPRKGCLSSETPTREVP KSSVSLSNSNSQMESNGTLQVTSTQKLQRKELSGNGSCSEVINIFREAPSASFSSSNKSS SNHGVSGGIEPTKTEIKDMAAMERKSTSVDVAKDVKDINDQEMERNNRVHISSKYDRSHE DCLDSSMKHMQLKPNTVETTYTGQHVASAPLYQMNKTGATGTPDPGTEGSHPDQTNDQVG GANGSMDCIHPTLPVDLKFGSSSTAQPFPHNYSGFAPTMQCQCNQDAYRSSVDMSSTFSN MLVSTLLSNPTVHAAARLAASYWPAADSNIPVDPNQGIFAQNAQGRHIVSPPSMASVVAA TVAAASAWWATQGLLPLFAPPMAFPFVPVPTASFPTADVQRATENCPVDNAPKECQVAQG QGQPEAMIVVASSGSGESGKGEVCPHTELNISLADKAETTPATGAETSDALGNKKKQDRS SCGSNTPSSSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVS EEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNKSAAVMDHELDTL VGPRASFPIELSHLNMKSRRTGFKPYKRCSVEAKENRVPAADEVGTKRIRLDSEPST