- Transcript BART1_0-u53703.018
- Transcript IDBART1_0-u53703.018
- Gene IDBART1_0-u53703
Barley RTD
Exon Structure of BART1_0-u53703.018
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385862497 | 385861654 | - |
| chr7H | 2 | 385863972 | 385862587 | - |
| chr7H | 3 | 385864284 | 385864078 | - |
| chr7H | 4 | 385865991 | 385865930 | - |
| chr7H | 5 | 385866338 | 385866227 | - |
| chr7H | 6 | 385866611 | 385866409 | - |
| chr7H | 7 | 385867084 | 385867000 | - |
| chr7H | 8 | 385867226 | 385867200 | - |
| chr7H | 9 | 385867533 | 385867389 | - |
| chr7H | 10 | 385871248 | 385871162 | - |
| chr7H | 11 | 385872394 | 385871331 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 1.00963 | 1.58942 | 0.00000180884 |
| morex | LEA | 0.294422 | 0.0000000541969 | 0.400474 |
| morex | EPI | 0.136162 | 0.151279 | 0.265976 |
| morex | ROO | 0 | 0.380825 | 0 |
| morex | ROO2 | 0.476156 | 0 | 0 |
| morex | NOD | 0 | 0.710874 | 0.000000000457392 |
| morex | RAC | 0 | 0 | 0.241507 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0.517543 | 1.53764 |
| morex | CAR5 | 2.07977 | 0.881268 | 0 |
| morex | CAR15 | 0 | 0 | 0.125453 |
| morex | LEM | 3.86304 | 11.7881 | 1.6688 |
| morex | LOD | 0.0866648 | 0.0174358 | 1.74213 |
| morex | PAL | 0.0000361304 | 0.0599705 | 0.0522872 |
| morex | SEN | 0.434284 | 1.99711 | 0.476463 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +1 | 0.0 | 878 | 526/725 (73%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT2G46830 @ ARAPORT AT2G46830.1 @ TAIR |
+1 | 7e-38 | 152 | 71/91 (78%) | Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608 |
| BRACH PP3 | Bradi3g16515.1.p | +1 | 0.0 | 936 | 559/722 (77%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4222 bp)
>BART1_0-u53703.018 4222 150831_barley_pseudomolecules CTCCCGGTTGGCTTCGTCCGGAAGCATCGGCCGGTGGCGGCAGAGAGAGGAGCTCCTGCG CCCGGCGCGGCGGTCGGTTGAGGTGGGTGGCAGGGATCGGGCCTGGGATTCCGTTTTTCA TGATGAACCGCTGGGCTGTTGATTTGATTTTATGCACGGGGTGGTGGCTTGGTGCAGGCC GCCGCGCGGAGGGCGGGCTGGGCGGGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTGCT CGCCCGAGGTAACCTAGAACTAAGAACCATACAAGTTTCCAGAAATTCGTGCTTCCACTG GACGACGCGATTGATATATACGCTCCCCTCGCAAGTCCGTTCCTAGGTGTGCTAGTTTGT CGACTGAAAACTGTGCAGCAAATGAGCCCACGCTTTTTTTTTTCTGTGCCTGGTCGGTCT CTGTGGTTGCAGTGTTTGATTCCCGTTGCTCTGCTCCAATGATCATGGTGCACAAGCTCA GAATTCTGAGCGCTTCAACTGCATCCTTTTTCTTGCTCTAGTTAGTCCTGTCCATTTTAC TGTGGCTAGGAATAAAATTAATAGTGATTCTATGGTCCAACTTCTTAGAAAACTGTATGG TCGACTAGTAAACTTAGGTACGTGTTTTTTTATCTTGCTTTTTTAGCTTTCACGGGTTTG AGGTGTGCTTTTATCAGATCTCTGATCTAGTATGGTGTTGTTTGTGCTCTGAAGTTGTTT AAAAAGAACGTGTGTAAGTTAGGCTTCTGAGTTTGCTATGCAGGGAGAGAACAGCTTATT TTTTTTATAAGCAGGTGAGTTAAGTTAATTTTGGATTTGCTATGCTGAAAAGAGAGCAGC TTGATCTAGTTTAACTAAGCAGGTGAAGTAATTTGACTAAAATAGATGCTATAGTGAATC GTGCTAAGAAGAAAATATATTTTTTATCTGCTATCAAACATTCATGTTTTTTTTTGGTTG TTGTTATGTCAATATATTTGCTATGATAAAATATCGGGCTGGCTTAAATTCTACTGTTTG TTTCGGAAAGTTCAGCAATCCTAAAGCAACATATGCATATTCAGGCATACTATGTTGTCC TTAAATAACGTGGTTCAGGTTGTGGGAGATAAACTCATGGATGCTCCTTCAAAGGTATAC TGTTAGTGGAGGTGTAGGAAGTGTTAAGGGGATACATAATCGGTTTTGAGCTGCGAGGCC CTGCATTTCTTCTGCCTGCTGTTTGATTCACGGCCCACTCTTTTCCTTCTATCCATTCAA GCAAAGTACTGGAATTTCTGAGCCCAATTTATTCAGGTCATGGGATTTGTTTGTCCTTAG CAGAGTTGAAGATAAAGAGAGGAAGGCTAAACTCTGCTGATCCGGTTCATGCGAGCAATG AGCCAACTGCAGTAGAGGTTTACAGTAGAGAGGTTTAGGGGGAGGTATGAGATACTACTC GCGTCAGGTCCAGCGTTTGGCTGGAGACACAGAAGGAGGAGTGCTGTTGTTTGTAGACGC CCTCAACTCCAAGTAACAAAGCGACCAGTTGTCAGCACTTCCTTTTGTTTTCGCATTTCC CTGGAATTGGAGATGGAGATAAATTCTTCGGGTGAGGAAACGGTGATAAAGGTGCGAAAG CCGTACACAATAACAAAACAGCGGGAGCGGTGGACTGAGGCAGAGCACAAACGGTTCCTT GAAGCCCTCAAACTGTATGGCAGAGCTTGGCAGCGCATAGAAGAGCATGTTGGGACAAAG ACGGCCGTGCAAATCAGAAGCCATGCTCAGAAGTTCTTCACAAAGTTGGAAAAGGAAGCT ATCAACAATGGTACTTCTCCAGGACAAGCTCATGATATAGACATACCTCCACCACGGCCT AAAAGAAAACCTAACTGTCCATATCCTCGAAAAGGTTGTCTCAGCTCTGAGACACCCACC AGAGAAGTTCCAAAATCAAGTGTTAGCTTGAGCAATAGCAATTCACAAATGGAAAGCAAT GGAACTCTTCAGGTCACCAGCACTCAGAAACTTCAAAGGAAGGAGTTGTCTGGAAACGGC AGTTGCTCAGAAGTTATTAATATCTTTAGAGAAGCACCATCTGCCTCATTTTCTTCCTCT AACAAGAGCTCTTCAAATCATGGTGTCTCTGGGGGAATTGAACCGACTAAAACAGAAATC AAAGATATGGCAGCCATGGAAAGGAAATCTACTTCCGTTGATGTGGCGAAGGATGTAAAA GATATTAATGACCAGGAAATGGAAAGGAACAACAGAGTCCACATCAGTTCTAAATATGAC CGTTCTCATGAAGATTGTTTGGATAGCTCAATGAAACACATGCAGTTGAAGCCAAATACT GTGGAGACAACATACACGGGTCAACATGTTGCAAGTGCTCCACTCTACCAAATGAATAAG ACTGGGGCAACTGGCACTCCAGACCCTGGAACTGAAGGAAGTCATCCTGATCAAACGAAT GATCAAGTGGGAGGAGCTAATGGAAGTATGGACTGCATCCATCCAACACTTCCCGTGGAT CTAAAATTTGGCAGCAGCTCCACAGCGCAGCCCTTTCCCCACAACTATTCAGGCTTTGCA CCAACGATGCAATGCCAGTGCAACCAAGATGCCTACAGGTCATCTGTTGATATGTCGTCC ACCTTCTCCAACATGCTCGTTTCCACATTGTTATCAAACCCCACAGTACATGCAGCTGCA AGGCTTGCAGCATCATACTGGCCAGCAGCAGACAGCAACATCCCTGTCGATCCAAATCAA GGAATTTTTGCTCAGAATGCTCAAGGAAGACATATTGTTTCTCCTCCAAGCATGGCTTCT GTGGTAGCAGCTACAGTTGCTGCGGCTTCGGCATGGTGGGCAACACAAGGTCTTCTCCCT CTTTTTGCTCCCCCCATGGCTTTTCCATTTGTCCCAGTTCCTACCGCTTCCTTTCCCACA GCGGATGTCCAGCGAGCTACAGAGAACTGCCCAGTGGACAACGCACCAAAGGAATGCCAA GTAGCTCAGGGGCAAGGTCAACCTGAAGCTATGATAGTTGTAGCATCTTCTGGGTCCGGC GAGAGTGGAAAAGGAGAGGTGTGTCCTCACACTGAGTTAAATATATCTCTGGCTGATAAA GCTGAGACAACACCTGCCACAGGAGCTGAAACAAGTGATGCTTTGGGCAACAAGAAGAAG CAGGATCGCTCTTCATGTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGCAGAACAT GTTCCTGAGAACCAAGATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAGTAATTCT TCAGCTGGTGACATGAACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGATTCATGG AAGGAAGTTTCCGAGGAGGGTCGTATGGCTTTCGATAAACTGTTCAGTAGAGGAAAGCTT CCCCAAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGTGGTTCCCAGAGGGGAGCAA GATGAAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGCTGCAGTTATGGACCATGAA CTTGACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGAATTGTCACACCTGAATATG AAATCCCGCCGGACAGGCTTCAAACCTTACAAGAGGTGCTCGGTGGAAGCAAAGGAGAAT AGGGTGCCGGCTGCTGACGAGGTTGGTACCAAAAGGATTCGCCTTGACAGCGAACCCTCC ACGTGATTTACTTCCCACGACATGATTACCAGCCTGCACAAGTAGTGTATTTTCAAGAAA TTGCGGTATTTACATCTAAGCTACTATAGGACTTGCCAGTCCTTGCAATGCAGTGTTTCA CAGAACTCAATTTGTTATGTGTTGTATGTTAATGCTTGCCGAGCAGCCCTTTTAGACTGT CAATTAAGCATTAAGCACCTATGCATGCTACTTTATTGGTAAAAAAGTAATTCTGCTTAT TTTTCTGTGATGAAGGATAATACTTGTAATTTTGCTTCATTTTACTGGATCATGTAGATT TAATTCCCGAAGGGAGAGCATGATCGCCTTGTGTTATTTTTATTTTCTTGAGAAAAATAT TGTGCTATGTATATGCACCCTAGATTTGAAGTTTCTTGGATGGTCCAGCTTTCTCAAACA GTGTACTTCTTTTAATTTAAAATAAAATATATGGCTTGTATCTTTAATATCGAAGGTACT CCCTCTATAAAAAGTATAAAAG
Protein Sequence (717 aa)
>BART1_0-u53703.018 717 150831_barley_pseudomolecules MEINSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNCPYPRKGCLSSETPTREVP KSSVSLSNSNSQMESNGTLQVTSTQKLQRKELSGNGSCSEVINIFREAPSASFSSSNKSS SNHGVSGGIEPTKTEIKDMAAMERKSTSVDVAKDVKDINDQEMERNNRVHISSKYDRSHE DCLDSSMKHMQLKPNTVETTYTGQHVASAPLYQMNKTGATGTPDPGTEGSHPDQTNDQVG GANGSMDCIHPTLPVDLKFGSSSTAQPFPHNYSGFAPTMQCQCNQDAYRSSVDMSSTFSN MLVSTLLSNPTVHAAARLAASYWPAADSNIPVDPNQGIFAQNAQGRHIVSPPSMASVVAA TVAAASAWWATQGLLPLFAPPMAFPFVPVPTASFPTADVQRATENCPVDNAPKECQVAQG QGQPEAMIVVASSGSGESGKGEVCPHTELNISLADKAETTPATGAETSDALGNKKKQDRS SCGSNTPSSSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVS EEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNKSAAVMDHELDTL VGPRASFPIELSHLNMKSRRTGFKPYKRCSVEAKENRVPAADEVGTKRIRLDSEPST