- Transcript BART1_0-u53703.005
- Transcript IDBART1_0-u53703.005
- Gene IDBART1_0-u53703
Barley RTD
Exon Structure of BART1_0-u53703.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385862497 | 385861652 | - |
| chr7H | 2 | 385863972 | 385862587 | - |
| chr7H | 3 | 385864284 | 385864078 | - |
| chr7H | 4 | 385865991 | 385865930 | - |
| chr7H | 5 | 385866338 | 385866227 | - |
| chr7H | 6 | 385866611 | 385866409 | - |
| chr7H | 7 | 385867084 | 385867000 | - |
| chr7H | 8 | 385867226 | 385867200 | - |
| chr7H | 9 | 385867543 | 385867389 | - |
| chr7H | 10 | 385872384 | 385872313 | - |
| chr7H | 11 | 385873145 | 385872839 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.15687 | 8.90516 | 6.73764 |
| morex | ETI | 15.1271 | 19.1934 | 7.85317 |
| morex | LEA | 58.0803 | 56.9191 | 32.1575 |
| morex | EPI | 0.879137 | 2.40592 | 0.882502 |
| morex | ROO | 6.92395 | 10.698 | 6.58542 |
| morex | ROO2 | 5.94958 | 7.36354 | 5.95951 |
| morex | NOD | 60.417 | 25.5392 | 57.6558 |
| morex | RAC | 0.700351 | 0.444328 | 0.41665 |
| morex | INF1 | 35.8495 | 27.0051 | 24.8652 |
| morex | INF2 | 44.8908 | 20.9484 | 22.3594 |
| morex | CAR5 | 11.5058 | 4.29961 | 4.80688 |
| morex | CAR15 | 0.669243 | 0.615262 | 1.00327 |
| morex | LEM | 44.076 | 33.6392 | 5.08377 |
| morex | LOD | 0.506518 | 0.430245 | 13.6398 |
| morex | PAL | 0.61854 | 0.329838 | 1.127 |
| morex | SEN | 6.46823 | 5.54925 | 5.2202 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +1 | 0.0 | 878 | 526/725 (73%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT2G46830 @ ARAPORT AT2G46830.1 @ TAIR |
+1 | 5e-38 | 152 | 71/91 (78%) | Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608 |
| BRACH PP3 | Bradi3g16515.1.p | +1 | 0.0 | 936 | 559/722 (77%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3462 bp)
>BART1_0-u53703.005 3462 150831_barley_pseudomolecules GCCCCAGGAAGTTAGCCTCGGAGGAGGCCGAGAAATCCACAAGTAAAGATAGTGGCTGAG ATTTCTCGCGGCGGCGAGAGCGACCCCCACGAGCCCCCGGCCACAAACACACCTCCACCG TGTAGTCTCCACGAGCCGCAGCATACAGGGCACCACCAGCAGCCAGCGAGCCCCGCACCC GAGTATCCGACATCTCGACCCTTCCCTTCCTTCGTCACTCGCGCGCGCGCGCGCACGCAC GCACGCACGCTTGTTCCTCCAGCTGCTGGCCTAGCTAGATCCCCAAAGCTGAGGAGGTGG CCGGAAAGCTTCGTCCGGAAGCATCGGCCGGTGGCGGCAGAGAGAGGAGCTCCTGCGCCC GGCGCGGCGGTCGGTTGAGTAACTTTCAGGTGTAGGAAGTGTTAAGGGGATACATAATCG GTTTTGAGCTGCGAGGCCCTGCATTTCTTCTGCCTGCTGTTTGATTCACGGCCCACTCTT TTCCTTCTATCCATTCAAGCAAAGTACTGGAATTTCTGAGCCCAATTTATTCAGGTCATG GGATTTGTTTGTCCTTAGCAGAGTTGAAGATAAAGAGAGGAAGGCTAAACTCTGCTGATC CGGTTCATGCGAGCAATGAGCCAACTGCAGTAGAGGTTTACAGTAGAGAGGTTTAGGGGG AGGTATGAGATACTACTCGCGTCAGGTCCAGCGTTTGGCTGGAGACACAGAAGGAGGAGT GCTGTTGTTTGTAGACGCCCTCAACTCCAAGTAACAAAGCGACCAGTTGTCAGCACTTCC TTTTGTTTTCGCATTTCCCTGGAATTGGAGATGGAGATAAATTCTTCGGGTGAGGAAACG GTGATAAAGGTGCGAAAGCCGTACACAATAACAAAACAGCGGGAGCGGTGGACTGAGGCA GAGCACAAACGGTTCCTTGAAGCCCTCAAACTGTATGGCAGAGCTTGGCAGCGCATAGAA GAGCATGTTGGGACAAAGACGGCCGTGCAAATCAGAAGCCATGCTCAGAAGTTCTTCACA AAGTTGGAAAAGGAAGCTATCAACAATGGTACTTCTCCAGGACAAGCTCATGATATAGAC ATACCTCCACCACGGCCTAAAAGAAAACCTAACTGTCCATATCCTCGAAAAGGTTGTCTC AGCTCTGAGACACCCACCAGAGAAGTTCCAAAATCAAGTGTTAGCTTGAGCAATAGCAAT TCACAAATGGAAAGCAATGGAACTCTTCAGGTCACCAGCACTCAGAAACTTCAAAGGAAG GAGTTGTCTGGAAACGGCAGTTGCTCAGAAGTTATTAATATCTTTAGAGAAGCACCATCT GCCTCATTTTCTTCCTCTAACAAGAGCTCTTCAAATCATGGTGTCTCTGGGGGAATTGAA CCGACTAAAACAGAAATCAAAGATATGGCAGCCATGGAAAGGAAATCTACTTCCGTTGAT GTGGCGAAGGATGTAAAAGATATTAATGACCAGGAAATGGAAAGGAACAACAGAGTCCAC ATCAGTTCTAAATATGACCGTTCTCATGAAGATTGTTTGGATAGCTCAATGAAACACATG CAGTTGAAGCCAAATACTGTGGAGACAACATACACGGGTCAACATGTTGCAAGTGCTCCA CTCTACCAAATGAATAAGACTGGGGCAACTGGCACTCCAGACCCTGGAACTGAAGGAAGT CATCCTGATCAAACGAATGATCAAGTGGGAGGAGCTAATGGAAGTATGGACTGCATCCAT CCAACACTTCCCGTGGATCTAAAATTTGGCAGCAGCTCCACAGCGCAGCCCTTTCCCCAC AACTATTCAGGCTTTGCACCAACGATGCAATGCCAGTGCAACCAAGATGCCTACAGGTCA TCTGTTGATATGTCGTCCACCTTCTCCAACATGCTCGTTTCCACATTGTTATCAAACCCC ACAGTACATGCAGCTGCAAGGCTTGCAGCATCATACTGGCCAGCAGCAGACAGCAACATC CCTGTCGATCCAAATCAAGGAATTTTTGCTCAGAATGCTCAAGGAAGACATATTGTTTCT CCTCCAAGCATGGCTTCTGTGGTAGCAGCTACAGTTGCTGCGGCTTCGGCATGGTGGGCA ACACAAGGTCTTCTCCCTCTTTTTGCTCCCCCCATGGCTTTTCCATTTGTCCCAGTTCCT ACCGCTTCCTTTCCCACAGCGGATGTCCAGCGAGCTACAGAGAACTGCCCAGTGGACAAC GCACCAAAGGAATGCCAAGTAGCTCAGGGGCAAGGTCAACCTGAAGCTATGATAGTTGTA GCATCTTCTGGGTCCGGCGAGAGTGGAAAAGGAGAGGTGTGTCCTCACACTGAGTTAAAT ATATCTCTGGCTGATAAAGCTGAGACAACACCTGCCACAGGAGCTGAAACAAGTGATGCT TTGGGCAACAAGAAGAAGCAGGATCGCTCTTCATGTGGTTCCAACACACCATCAAGTAGT GATGTAGAGGCAGAACATGTTCCTGAGAACCAAGATCAAGCTAACGACAAGACACAGCAA GCATGTTGCAGTAATTCTTCAGCTGGTGACATGAACCATCGCAGGTTTAGGAACATTTCA AGCACGAATGATTCATGGAAGGAAGTTTCCGAGGAGGGTCGTATGGCTTTCGATAAACTG TTCAGTAGAGGAAAGCTTCCCCAAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGTG GTTCCCAGAGGGGAGCAAGATGAAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGCT GCAGTTATGGACCATGAACTTGACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGAA TTGTCACACCTGAATATGAAATCCCGCCGGACAGGCTTCAAACCTTACAAGAGGTGCTCG GTGGAAGCAAAGGAGAATAGGGTGCCGGCTGCTGACGAGGTTGGTACCAAAAGGATTCGC CTTGACAGCGAACCCTCCACGTGATTTACTTCCCACGACATGATTACCAGCCTGCACAAG TAGTGTATTTTCAAGAAATTGCGGTATTTACATCTAAGCTACTATAGGACTTGCCAGTCC TTGCAATGCAGTGTTTCACAGAACTCAATTTGTTATGTGTTGTATGTTAATGCTTGCCGA GCAGCCCTTTTAGACTGTCAATTAAGCATTAAGCACCTATGCATGCTACTTTATTGGTAA AAAAGTAATTCTGCTTATTTTTCTGTGATGAAGGATAATACTTGTAATTTTGCTTCATTT TACTGGATCATGTAGATTTAATTCCCGAAGGGAGAGCATGATCGCCTTGTGTTATTTTTA TTTTCTTGAGAAAAATATTGTGCTATGTATATGCACCCTAGATTTGAAGTTTCTTGGATG GTCCAGCTTTCTCAAACAGTGTACTTCTTTTAATTTAAAATAAAATATATGGCTTGTATC TTTAATATCGAAGGTACTCCCTCTATAAAAAGTATAAAAGCA
Protein Sequence (717 aa)
>BART1_0-u53703.005 717 150831_barley_pseudomolecules MEINSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNCPYPRKGCLSSETPTREVP KSSVSLSNSNSQMESNGTLQVTSTQKLQRKELSGNGSCSEVINIFREAPSASFSSSNKSS SNHGVSGGIEPTKTEIKDMAAMERKSTSVDVAKDVKDINDQEMERNNRVHISSKYDRSHE DCLDSSMKHMQLKPNTVETTYTGQHVASAPLYQMNKTGATGTPDPGTEGSHPDQTNDQVG GANGSMDCIHPTLPVDLKFGSSSTAQPFPHNYSGFAPTMQCQCNQDAYRSSVDMSSTFSN MLVSTLLSNPTVHAAARLAASYWPAADSNIPVDPNQGIFAQNAQGRHIVSPPSMASVVAA TVAAASAWWATQGLLPLFAPPMAFPFVPVPTASFPTADVQRATENCPVDNAPKECQVAQG QGQPEAMIVVASSGSGESGKGEVCPHTELNISLADKAETTPATGAETSDALGNKKKQDRS SCGSNTPSSSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVS EEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNKSAAVMDHELDTL VGPRASFPIELSHLNMKSRRTGFKPYKRCSVEAKENRVPAADEVGTKRIRLDSEPST