- Transcript BART1_0-u53291.019
- Transcript IDBART1_0-u53291.019
- Gene IDBART1_0-u53291
Barley RTD
Exon Structure of BART1_0-u53291.019
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367197114 | 367196830 | + |
| chr7H | 2 | 367197307 | 367197196 | + |
| chr7H | 3 | 367197953 | 367197468 | + |
| chr7H | 4 | 367198300 | 367198088 | + |
| chr7H | 5 | 367199101 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.09244 | 0 | 3.79115 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0.000000106191 |
| morex | EPI | 0.509552 | 0.0000000227914 | 0.543654 |
| morex | ROO | 0.00000185573 | 0.0235121 | 0 |
| morex | ROO2 | 0.0000663186 | 2.60792 | 0 |
| morex | NOD | 0 | 0.717803 | 0.0985861 |
| morex | RAC | 1.15177 | 0.982013 | 1.73356 |
| morex | INF1 | 0 | 0 | 0.000011955 |
| morex | INF2 | 0 | 0.343772 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.811775 | 3.03967 | 0.000118921 |
| morex | LOD | 0.627725 | 0.702112 | 0.477295 |
| morex | PAL | 0 | 1.03098 | 0.00000000696371 |
| morex | SEN | 1.65917 | 0.00000109472 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +2 | 0.0 | 588 | 278/374 (74%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+2 | 3e-103 | 326 | 177/365 (48%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.2.p | +2 | 0.0 | 641 | 305/377 (81%) | pacid=32821514 transcript=Bradi3g18190.2 locus=Bradi3g18190 ID=Bradi3g18190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1821 bp)
>BART1_0-u53291.019 1821 150831_barley_pseudomolecules AGTCAATCATGCTATCTCCTGGGTATGCGAACAACCCCCAAATGATGTATGGAGCTTATT CTCCTGTTTCAACTGTTGGAGAGGGTCAGTCCTACTCCCCTATGCACTTCCCCTTCTCAA ATCCGTACTACCAGCCACCGGCTTCTCTTAGTATGGGATATTCAAATTCTGGTACTGGAA TGTCTCAAGGAGACCCTATGCTTCAGCAAGAGTACTTCCTTCCTGATGGTCTTCTCTATT CACCCACAGCAGTGTACCGCCAACCATTTGGGTCATACAACAGAGATTGGTCAGAGCCAT GCCAAACTAATTGTGAGTTTCTTCCGCAGCGGCAACACAACCAAGCAATGCTTCGGGACT ATTTGGGCAAGGGAATGCACCATTGGCTTTTGGAATGCATGGAACAATGTATAATTCTGG ATCCTACAAGGCACACCAACAAGCTAGTAAATATGGAGGCACTACTCCTAATTGGGGTTC TGCCGGTCGTAGATTTAATAATTTTGACTGCAACTCCAGTCAACAAAGGGGGAGCATGCC ATTCAATATCCAGAATGGTGCTCTGGAGTTTCTGAACGAGCAAAACCGCGGCCCACGTGC TGCAAAACCAAAGAAACAAGACAGAGACAATTCTTTAGTAGATGACAAAAGCGAGAAAAC CACTCTGCTTATTGACAGTGAACTGTACAATCGTCCTGATTTTGCCACGGAGTACAAGGA TGCGATTTTTTTTGTAATTAAATCATACACAGAGGACCATGTACATAGGAGCATTAAGTA CAATGTCTGGGCCAGCACAGCTAGTGGGAATAGAAAGCTGGATTCAGCTTATCGTGCGGC CAAACAGAAAGAAGACCATTCCCGTGTTTTCTTGTTCTTCTCGGTTAATGGCAGTGGTCA GTTCTGCGGTGTTGCTGAGATGATTGGACCTGTTGACTTCGACAGGAGCGTTGATTATTG GCAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGAAGTGGCACATTATTAAGGATGTCCC AAACACCCTACTCCGGCACATCACTCTTGAGAACAATGACAACAAACCTGTAACAAATAG CAGGGACACTCAGGAGGTCAAGCTAGAGTATGGTCTCCAGATGCTAAGCATATTCAAGAA TCATGAGGCCGAGACAACCATTGTGGAGGACTTCGACTTCTATGAGCAACGGGAGGAAGC CTTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCAGCGCAGAGTCCCTGAAGCCAACAGA TGCTAAGGCTGTAGGAAGTTCTGTTACTCATATCGTGGATTCATTTTCTCGAAGCGTCCA GCTGAAAGAGATCGAGAAAAGTGATAAGAGAACTGATGGTGCCATCTCAGTGAATGGTTC ACAGACAGCTACCGTCAAGGCCGAAAAAAGCACTGCAAACAAAACTACAGGTTCTGTGGA GGAGAGCAGTTGATTACCTCCTGCCATTTACTAGTTTGGAGCAGCAGTTGGATCCATATG ATTTGATGCTCGTCTGGAGTTGAGAAGGGAAAAAGCTGCCGATTCGGGTTTAGATTTGGG CTGCTGCTGCTTGCAGTTGTGAACATCATACTCCTTATTTCGCCTCCATTTAGGTTATAG TTTTTCAATATCATAGTTTCAAAATTCTTGTTTGTGGATCCTTGCTTCTGTGTTCTTTCT TGTTTTCTTCTCTCTTTGTTTTACTTGCGTTGTGTCGTGAATGCTGTTCAGTTTTAGTGG CCTTCTCATCACTTTTGGTTTACCGTCTGTCATAAATGCTGCCCAGTTGTGTTGTGAATG ATGTTCTCTTTTACTACTCCC
Protein Sequence (352 aa)
>BART1_0-u53291.019 352 150831_barley_pseudomolecules MHGTMYNSGSYKAHQQASKYGGTTPNWGSAGRRFNNFDCNSSQQRGSMPFNIQNGALEFL NEQNRGPRAAKPKKQDRDNSLVDDKSEKTTLLIDSELYNRPDFATEYKDAIFFVIKSYTE DHVHRSIKYNVWASTASGNRKLDSAYRAAKQKEDHSRVFLFFSVNGSGQFCGVAEMIGPV DFDRSVDYWQQDKWSGQFPVKWHIIKDVPNTLLRHITLENNDNKPVTNSRDTQEVKLEYG LQMLSIFKNHEAETTIVEDFDFYEQREEALKENRRQQQPGSAESLKPTDAKAVGSSVTHI VDSFSRSVQLKEIEKSDKRTDGAISVNGSQTATVKAEKSTANKTTGSVEESS