Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G069070	96.7	+	+	4413	-151	Containing

Transcripts from Gene BART1_0-u53291

Transcript	Length(bp)	Description
BART1_0-u53291.001	2676	2676 bp MSTRG.53291.1 MSTRG.53291
BART1_0-u53291.002	2078	2078 bp MSTRG.53291.2 MSTRG.53291
BART1_0-u53291.003	2673	2673 bp MSTRG.53291.3 MSTRG.53291
BART1_0-u53291.004	2568	2568 bp MSTRG.53291.4 MSTRG.53291
BART1_0-u53291.005	2093	2093 bp MSTRG.53291.5 MSTRG.53291
BART1_0-u53291.006	2457	2457 bp MSTRG.53291.6 MSTRG.53291
BART1_0-u53291.007	2417	2417 bp MSTRG.53291.7 MSTRG.53291
BART1_0-u53291.008	2405	2405 bp MSTRG.53291.8 MSTRG.53291
BART1_0-u53291.009	2340	2340 bp MSTRG.53291.9 MSTRG.53291
BART1_0-u53291.010	2363	2363 bp MSTRG.53291.10 MSTRG.53291
BART1_0-u53291.011	2415	2415 bp MSTRG.53291.11 MSTRG.53291
BART1_0-u53291.012	2365	2365 bp MSTRG.53291.12 MSTRG.53291
BART1_0-u53291.013	2591	2591 bp MSTRG.53291.13 MSTRG.53291
BART1_0-u53291.014	1505	1505 bp MSTRG.53291.14 MSTRG.53291
BART1_0-u53291.015	2737	2737 bp MSTRG.53291.15 MSTRG.53291
BART1_0-u53291.016	2525	2525 bp MSTRG.53291.16 MSTRG.53291
BART1_0-u53291.017	1198	1198 bp MSTRG.53291.17 MSTRG.53291
BART1_0-u53291.018	1662	1662 bp MSTRG.53291.18 MSTRG.53291
BART1_0-u53291.019	1821	1821 bp MSTRG.53291.19 MSTRG.53291

Exon Structure of BART1_0-u53291

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g12760.2	+1	4e-137	304	144/187 (77%)	protein|YT521-B, putative, expressed
TAIR PP10	AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR	+3	4e-55	202	94/160 (59%)	Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634
BRACH PP3	Bradi3g18190.2.p	+1	8e-145	320	151/186 (81%)	pacid=32821514 transcript=Bradi3g18190.2 locus=Bradi3g18190 ID=Bradi3g18190.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0006281	DNA repair
GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway
GO:0009094	L-phenylalanine biosynthetic process
GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process
GO:0006310	DNA recombination
GO:0000723	telomere maintenance
GO:0006950	response to stress
GO:0004664	prephenate dehydratase activity
GO:0020037	heme binding
GO:0004601	peroxidase activity
GO:0005524	ATP binding
GO:0006979	response to oxidative stress
GO:0003678	DNA helicase activity
GO:0006558	L-phenylalanine metabolic process
GO:0003723	RNA binding
GO:0032508	DNA duplex unwinding
GO:0098754	detoxification
GO:0016021	integral component of membrane
GO:0051716	cellular response to stimulus
GO:0098869	cellular oxidant detoxification
GO:0005829	cytosol
GO:0055114	oxidation-reduction process

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons