- Transcript BART1_0-u53291.016
- Transcript IDBART1_0-u53291.016
- Gene IDBART1_0-u53291
Barley RTD
Exon Structure of BART1_0-u53291.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367196042 | 367195966 | + |
| chr7H | 2 | 367196746 | 367196124 | + |
| chr7H | 3 | 367197114 | 367196832 | + |
| chr7H | 4 | 367197307 | 367197196 | + |
| chr7H | 5 | 367197953 | 367197465 | + |
| chr7H | 6 | 367198300 | 367198088 | + |
| chr7H | 7 | 367199104 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.664512 | 0.238005 | 0 |
| morex | LEA | 0 | 0.00000000256855 | 0.0000000951181 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.153362 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.549761 | 0.409433 | 0 |
| morex | RAC | 0 | 0 | 0.372513 |
| morex | INF1 | 0.41705 | 1.29338 | 0 |
| morex | INF2 | 0.447619 | 0.153768 | 0.970062 |
| morex | CAR5 | 0.235385 | 0.876024 | 0 |
| morex | CAR15 | 0 | 0 | 0.449288 |
| morex | LEM | 0.531613 | 0.42438 | 0.215414 |
| morex | LOD | 0.323213 | 0.335923 | 0.295446 |
| morex | PAL | 0 | 0.285829 | 0.207767 |
| morex | SEN | 2.00655 | 0.404905 | 0.861957 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +1 | 0.0 | 593 | 278/374 (74%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+1 | 4e-100 | 324 | 177/365 (48%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.1.p | +1 | 0.0 | 643 | 306/378 (81%) | pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2525 bp)
>BART1_0-u53291.016 2525 150831_barley_pseudomolecules TAGATTGCACAATTCTGCTGCAATCAGAAATTGTAGTTGATAATAACCCCTCCAAGAGTA CAAATACCAAAGAGCAGATTATTTCTATTACGGCTGAGAAAACAAGTGCTTCTGATGCGC GGGGCTCTACCTCCTTAAAGTCACCAAAAGGTGCACAAGAGAAGGCTAATTTTTTGGGAA AAGGTGGAGAACAGCCTTATGTCTACCAGCCCAATGTGTATGCTCCACAGCCACAGACAG TCTATTCTGGAGGTTAGGTTGCTATTATTTTCTGTGTACTAATAATGCTGATACTGATAC ATATTCTAAGCATCATTTGCACATTGTAGAGGGCAAAATACACACCCAGAATACTAAAGG GTCAAGTTTGCATTGTTGCCCACTATATTTAGTTTTTACTATTCATATAATTGATTTTTT TTGCTTGACTGGTCTTCTTTGTTCACCATTACTACTTCTGTAACTAAATATAAGACGTCT TATATTTAGTTACAGAGGTAGTAATATAAATTGCTATTGAAGTATTATATCTTGATTCTT ACGAGGTTAGATGGTAGATTATTTGGTATCTCCTTTTCATGGAATATTTTTTTTAATTTG AATATTATTTTGATCTTCTGTAGGATATATCAACCCTTCAGGGCAATGGGAAGAGTATCC CTATTATGTGAGTATGGAAGGAGTCCATTCTGCGTCACCTTCAATCATGCTATCTCCTGG GTATGCGAACAACCCCCAAATGATGTATGGAGCTTATTCTCCTGTTTCAACTGTTGGAGA GGGTCAGTCCTACTCCCCTATGCACTTCCCCTTCTCAAATCCGTACTACCAGCCACCGGC TTCTCTTAGTATGGGATATTCAAATTCTGGTACTGGAATGTCTCAAGGAGACCCTATGCT TCAGCAAGAGTACTTCCTTCCTGATGGTCTTCTCTATTCACCCACAGCAGTGTACCGCCA ACCATTTGGGTCATACAACAGAGATTGGTCAGAGCCATGCCAAACTAATTGTGAGTTTCT TCCGCAGCGGCAACACAACCAAGCAATGCTTCGGGACTATTTGGGCAAGGGAATGCACCA TTGGCTTTTGGAATGCAGCATGGAACAATGTATAATTCTGGATCCTACAAGGCACACCAA CAAGCTAGTAAATATGGAGGCACTACTCCTAATTGGGGTTCTGCCGGTCGTAGATTTAAT AATTTTGACTGCAACTCCAGTCAACAAAGGGGGAGCATGCCATTCAATATCCAGAATGGT GCTCTGGAGTTTCTGAACGAGCAAAACCGCGGCCCACGTGCTGCAAAACCAAAGAAACAA GACAGAGACAATTCTTTAGTAGATGACAAAAGCGAGAAAACCACTCTGCTTATTGACAGT GAACTGTACAATCGTCCTGATTTTGCCACGGAGTACAAGGATGCGATTTTTTTTGTAATT AAATCATACACAGAGGACCATGTACATAGGAGCATTAAGTACAATGTCTGGGCCAGCACA GCTAGTGGGAATAGAAAGCTGGATTCAGCTTATCGTGCGGCCAAACAGAAAGAAGACCAT TCCCGTGTTTTCTTGTTCTTCTCGGTTAATGGCAGTGGTCAGTTCTGCGGTGTTGCTGAG ATGATTGGACCTGTTGACTTCGACAGGAGCGTTGATTATTGGCAGCAAGACAAGTGGAGT GGCCAGTTTCCTGTGAAGTGGCACATTATTAAGGATGTCCCAAACACCCTACTCCGGCAC ATCACTCTTGAGAACAATGACAACAAACCTGTAACAAATAGCAGGGACACTCAGGAGGTC AAGCTAGAGTATGGTCTCCAGATGCTAAGCATATTCAAGAATCATGAGGCCGAGACAACC ATTGTGGAGGACTTCGACTTCTATGAGCAACGGGAGGAAGCCTTGAAGGAAAATAGACGT CAGCAGCAGCCTGGCAGCGCAGAGTCCCTGAAGCCAACAGATGCTAAGGCTGTAGGAAGT TCTGTTACTCATATCGTGGATTCATTTTCTCGAAGCGTCCAGCTGAAAGAGATCGAGAAA AGTGATAAGAGAACTGATGGTGCCATCTCAGTGAATGGTTCACAGACAGCTACCGTCAAG GCCGAAAAAAGCACTGCAAACAAAACTACAGGTTCTGTGGAGGAGAGCAGTTGATTACCT CCTGCCATTTACTAGTTTGGAGCAGCAGTTGGATCCATATGATTTGATGCTCGTCTGGAG TTGAGAAGGGAAAAAGCTGCCGATTCGGGTTTAGATTTGGGCTGCTGCTGCTTGCAGTTG TGAACATCATACTCCTTATTTCGCCTCCATTTAGGTTATAGTTTTTCAATATCATAGTTT CAAAATTCTTGTTTGTGGATCCTTGCTTCTGTGTTCTTTCTTGTTTTCTTCTCTCTTTGT TTTACTTGCGTTGTGTCGTGAATGCTGTTCAGTTTTAGTGGCCTTCTCATCACTTTTGGT TTACCGTCTGTCATAAATGCTGCCCAGTTGTGTTGTGAATGATGTTCTCTTTTACTACTC CCTCC
Protein Sequence (353 aa)
>BART1_0-u53291.016 353 150831_barley_pseudomolecules MQHGTMYNSGSYKAHQQASKYGGTTPNWGSAGRRFNNFDCNSSQQRGSMPFNIQNGALEF LNEQNRGPRAAKPKKQDRDNSLVDDKSEKTTLLIDSELYNRPDFATEYKDAIFFVIKSYT EDHVHRSIKYNVWASTASGNRKLDSAYRAAKQKEDHSRVFLFFSVNGSGQFCGVAEMIGP VDFDRSVDYWQQDKWSGQFPVKWHIIKDVPNTLLRHITLENNDNKPVTNSRDTQEVKLEY GLQMLSIFKNHEAETTIVEDFDFYEQREEALKENRRQQQPGSAESLKPTDAKAVGSSVTH IVDSFSRSVQLKEIEKSDKRTDGAISVNGSQTATVKAEKSTANKTTGSVEESS