- Transcript BART1_0-u53291.015
- Transcript IDBART1_0-u53291.015
- Gene IDBART1_0-u53291
Barley RTD
Exon Structure of BART1_0-u53291.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367196746 | 367195966 | + |
| chr7H | 2 | 367197114 | 367196832 | + |
| chr7H | 3 | 367197307 | 367197196 | + |
| chr7H | 4 | 367198300 | 367197468 | + |
| chr7H | 5 | 367199104 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 1.00988 | 0.37153 |
| morex | ETI | 0 | 0.521222 | 0.209986 |
| morex | LEA | 0 | 0.443478 | 0.646215 |
| morex | EPI | 0.935237 | 1.60406 | 0.704014 |
| morex | ROO | 0.276736 | 0.706117 | 0 |
| morex | ROO2 | 0.919081 | 0.964089 | 1.45454 |
| morex | NOD | 0 | 0.554718 | 0.645858 |
| morex | RAC | 1.42229 | 0.748782 | 1.22204 |
| morex | INF1 | 0 | 0.944264 | 0.765669 |
| morex | INF2 | 0.397527 | 0.564016 | 0.640134 |
| morex | CAR5 | 1.37956 | 0.852221 | 0.303217 |
| morex | CAR15 | 0 | 0.316131 | 0 |
| morex | LEM | 0.67551 | 0.672684 | 0.287392 |
| morex | LOD | 1.10828 | 0.62418 | 0 |
| morex | PAL | 0.561791 | 0.805356 | 0.639928 |
| morex | SEN | 0.698986 | 0.975472 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +1 | 4e-137 | 304 | 144/187 (77%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+3 | 4e-55 | 202 | 94/160 (59%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.2.p | +1 | 8e-145 | 320 | 151/186 (81%) | pacid=32821514 transcript=Bradi3g18190.2 locus=Bradi3g18190 ID=Bradi3g18190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2737 bp)
>BART1_0-u53291.015 2737 150831_barley_pseudomolecules TAGATTGCACAATTCTGCTGCAATCAGAAATTGTAGTTGATAATAACCCCTCCAAGAGTA CAAATACCAAAGAGCAGGTAATGTGCCTGTACAGTTTATTTTCTCTCCTTCTGTGCAAAC ATTGAAATATTACCGGTAGTTGATTTTTGTTGCATCAGATTATTTCTATTACGGCTGAGA AAACAAGTGCTTCTGATGCGCGGGGCTCTACCTCCTTAAAGTCACCAAAAGGTGCACAAG AGAAGGCTAATTTTTTGGGAAAAGGTGGAGAACAGCCTTATGTCTACCAGCCCAATGTGT ATGCTCCACAGCCACAGACAGTCTATTCTGGAGGTTAGGTTGCTATTATTTTCTGTGTAC TAATAATGCTGATACTGATACATATTCTAAGCATCATTTGCACATTGTAGAGGGCAAAAT ACACACCCAGAATACTAAAGGGTCAAGTTTGCATTGTTGCCCACTATATTTAGTTTTTAC TATTCATATAATTGATTTTTTTTGCTTGACTGGTCTTCTTTGTTCACCATTACTACTTCT GTAACTAAATATAAGACGTCTTATATTTAGTTACAGAGGTAGTAATATAAATTGCTATTG AAGTATTATATCTTGATTCTTACGAGGTTAGATGGTAGATTATTTGGTATCTCCTTTTCA TGGAATATTTTTTTTAATTTGAATATTATTTTGATCTTCTGTAGGATATATCAACCCTTC AGGGCAATGGGAAGAGTATCCCTATTATGTGAGTATGGAAGGAGTCCATTCTGCGTCACC TTCAATCATGCTATCTCCTGGGTATGCGAACAACCCCCAAATGATGTATGGAGCTTATTC TCCTGTTTCAACTGTTGGAGAGGGTCAGTCCTACTCCCCTATGCACTTCCCCTTCTCAAA TCCGTACTACCAGCCACCGGCTTCTCTTAGTATGGGATATTCAAATTCTGGTACTGGAAT GTCTCAAGGAGACCCTATGCTTCAGCAAGAGTACTTCCTTCCTGATGGTCTTCTCTATTC ACCCACAGCAGTGTACCGCCAACCATTTGGGTCATACAACAGAGATTGGTCAGAGCCATG CCAAACTAATTGTGAGTTTCTTCCGCAGCGGCAACACAACCAAGCAATGCTTCGGGACTA TTTGGGCAAGGGAATGCACCATTGGCTTTTGGAATGCATGGAACAATGTATAATTCTGGA TCCTACAAGGCACACCAACAAGCTAGTAAATATGGAGGCACTACTCCTAATTGGGGTTCT GCCGGTCGTAGATTTAATAATTTTGACTGCAACTCCAGTCAACAAAGGGGGAGCATGCCA TTCAATATCCAGAATGGTGCTCTGGAGTTTCTGAACGAGCAAAACCGCGGCCCACGTGCT GCAAAACCAAAGAAACAAGACAGAGACAATTCTTTAGTAGATGACAAAAGCGAGAAAACC ACTCTGCTTATTGACAGTGAACTGTACAATCGTCCTGATTTTGCCACGGAGTACAAGGAT GCGATTTTTTTTGTAATTAAATCATACACAGAGGACCATGTACATAGGAGCATTAAGTAC AATGTCTGGGCCAGCACAGCTAGTGGGAATAGAAAGCTGGATTCAGCTTATCGTGCGGCC AAACAGAAAGAAGACCATTCCCGTGTTTTCTTGTTCTTCTCGGTAAGACTAGCCCCTTTC TTTTTGTAGTTTATGCTCCTGTTGATGTAAGTACGAGGCTGAGAATGATGCATTGGATCT ACATGCTTTGTGTCTGTAGAGATGTGAAATTTATTCTGATTCATAACTGCTTATAGGTTA ATGGCAGTGGTCAGTTCTGCGGTGTTGCTGAGATGATTGGACCTGTTGACTTCGACAGGA GCGTTGATTATTGGCAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGAAGTGGCACATTA TTAAGGATGTCCCAAACACCCTACTCCGGCACATCACTCTTGAGAACAATGACAACAAAC CTGTAACAAATAGCAGGGACACTCAGGAGGTCAAGCTAGAGTATGGTCTCCAGATGCTAA GCATATTCAAGAATCATGAGGCCGAGACAACCATTGTGGAGGACTTCGACTTCTATGAGC AACGGGAGGAAGCCTTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCAGCGCAGAGTCCC TGAAGCCAACAGATGCTAAGGCTGTAGGAAGTTCTGTTACTCATATCGTGGATTCATTTT CTCGAAGCGTCCAGCTGAAAGAGATCGAGAAAAGTGATAAGAGAACTGATGGTGCCATCT CAGTGAATGGTTCACAGACAGCTACCGTCAAGGCCGAAAAAAGCACTGCAAACAAAACTA CAGGTTCTGTGGAGGAGAGCAGTTGATTACCTCCTGCCATTTACTAGTTTGGAGCAGCAG TTGGATCCATATGATTTGATGCTCGTCTGGAGTTGAGAAGGGAAAAAGCTGCCGATTCGG GTTTAGATTTGGGCTGCTGCTGCTTGCAGTTGTGAACATCATACTCCTTATTTCGCCTCC ATTTAGGTTATAGTTTTTCAATATCATAGTTTCAAAATTCTTGTTTGTGGATCCTTGCTT CTGTGTTCTTTCTTGTTTTCTTCTCTCTTTGTTTTACTTGCGTTGTGTCGTGAATGCTGT TCAGTTTTAGTGGCCTTCTCATCACTTTTGGTTTACCGTCTGTCATAAATGCTGCCCAGT TGTGTTGTGAATGATGTTCTCTTTTACTACTCCCTCC
Protein Sequence (177 aa)
>BART1_0-u53291.015 177 150831_barley_pseudomolecules MIGPVDFDRSVDYWQQDKWSGQFPVKWHIIKDVPNTLLRHITLENNDNKPVTNSRDTQEV KLEYGLQMLSIFKNHEAETTIVEDFDFYEQREEALKENRRQQQPGSAESLKPTDAKAVGS SVTHIVDSFSRSVQLKEIEKSDKRTDGAISVNGSQTATVKAEKSTANKTTGSVEESS