- Transcript BART1_0-u53291.011
- Transcript IDBART1_0-u53291.011
- Gene IDBART1_0-u53291
Barley RTD
Exon Structure of BART1_0-u53291.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367195109 | 367194794 | + |
| chr7H | 2 | 367196042 | 367195969 | + |
| chr7H | 3 | 367196298 | 367196124 | + |
| chr7H | 4 | 367196746 | 367196670 | + |
| chr7H | 5 | 367197114 | 367196832 | + |
| chr7H | 6 | 367197307 | 367197240 | + |
| chr7H | 7 | 367197953 | 367197465 | + |
| chr7H | 8 | 367198300 | 367198099 | + |
| chr7H | 9 | 367199107 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.268156 | 0 |
| morex | ETI | 0.00444 | 0.00000381584 | 0.1319 |
| morex | LEA | 0.118473 | 0.00000200178 | 0.0034583 |
| morex | EPI | 0.049669 | 7.87009 | 2.64233 |
| morex | ROO | 0.271076 | 0.00000000573554 | 0.0000000896316 |
| morex | ROO2 | 0.0000630614 | 0.00000823538 | 0.0148229 |
| morex | NOD | 0.000045525 | 0.000561501 | 0.00020332 |
| morex | RAC | 0.000206041 | 0.00122121 | 0.000000312284 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.00000432477 | 0.000000000569816 | 0.000000477007 |
| morex | CAR5 | 0.000000137035 | 0.000259011 | 0.00214628 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.0213751 | 0.00000552637 | 0.000183156 |
| morex | LOD | 0.0142882 | 0.00000328711 | 0.000000220358 |
| morex | PAL | 0.115725 | 0.366668 | 0.0000000182946 |
| morex | SEN | 0.000000000329063 | 0.000813142 | 0.321264 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +1 | 0.0 | 603 | 296/383 (77%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+2 | 3e-99 | 201 | 93/163 (57%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.1.p | +1 | 0.0 | 690 | 334/401 (83%) | pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2415 bp)
>BART1_0-u53291.011 2415 150831_barley_pseudomolecules GTCCCAATTCGATGAAAGAAAAATCCGGACCGGGATTGTGCGCGTGGACAAAACGAGCCG GCACAGGTCCGGTTTTTAAAGCCCGCGATGATTAGCGTGGCCGGACCTCTTCCTCTTCGT CTCGCATACTCACCAGCGTCAAACCCGACGGTGGAAGGAAGCCCCTCCTCGCCGACCATC GACGGCCTCCGTGTCTCCTCCAGCCGGAGAACGTAGCTACGCTAGCCCCTCTTTCCTCTC CTGTTTCGTCCCCCTCCTCCTCGTCCCATCTGCTGGAACATGGCGTTGAGCGGAGGAGAT TCGTCCGGATTCGTCGATTGCACAATTCTGCTGCAATCAGAAATTGTAGTTGATAATAAC CCCTCCAAGAGTACAAATACCAAAGAGCAGATTATTTCTATTACGGCTGAGAAAACAAGT GCTTCTGATGCGCGGGGCTCTACCTCCTTAAAGTCACCAAAAGGTGCACAAGAGAAGGCT AATTTTTTGGGAAAAGGTGGAGAACAGCCTTATGTCTACCAGCCCAATGTGTATGCTCCA CAGCCACAGACAGTCTATTCTGGAGGATATATCAACCCTTCAGGGCAATGGGAAGAGTAT CCCTATTATGTGAGTATGGAAGGAGTCCATTCTGCGTCACCTTCAATCATGCTATCTCCT GGGTATGCGAACAACCCCCAAATGATGTATGGAGCTTATTCTCCTGTTTCAACTGTTGGA GAGGGTCAGTCCTACTCCCCTATGCACTTCCCCTTCTCAAATCCGTACTACCAGCCACCG GCTTCTCTTAGTATGGGATATTCAAATTCTGGTACTGGAATGTCTCAAGGAGACCCTATG CTTCAGCAAGAGTACTTCCTTCCTGATGGTCTTCTCTATTCACCCACAGCAGTGTACCGC CAACCATTTGGGTCATACAACAGAGCGGCAACACAACCAAGCAATGCTTCGGGACTATTT GGGCAAGGGAATGCACCATTGGCTTTTGGAATGCAGCATGGAACAATGTATAATTCTGGA TCCTACAAGGCACACCAACAAGCTAGTAAATATGGAGGCACTACTCCTAATTGGGGTTCT GCCGGTCGTAGATTTAATAATTTTGACTGCAACTCCAGTCAACAAAGGGGGAGCATGCCA TTCAATATCCAGAATGGTGCTCTGGAGTTTCTGAACGAGCAAAACCGCGGCCCACGTGCT GCAAAACCAAAGAAACAAGACAGAGACAATTCTTTAGTAGATGACAAAAGCGAGAAAACC ACTCTGCTTATTGACAGTGAACTGTACAATCGTCCTGATTTTGCCACGGAGTACAAGGAT GCGATTTTTTTTGTAATTAAATCATACACAGAGGACCATGTACATAGGAGCATTAAGTAC AATGTCTGGGCCAGCACAGCTAGTGGGAATAGAAAGCTGGATTCAGCTTATCGTGCGGCC AAACAGAAAGAAGACCATTCCCGTGTTTTCTTGTTCTTCTCGTGGTCAGTTCTGCGGTGT TGCTGAGATGATTGGACCTGTTGACTTCGACAGGAGCGTTGATTATTGGCAGCAAGACAA GTGGAGTGGCCAGTTTCCTGTGAAGTGGCACATTATTAAGGATGTCCCAAACACCCTACT CCGGCACATCACTCTTGAGAACAATGACAACAAACCTGTAACAAATAGCAGGGACACTCA GGAGGTCAAGCTAGAGTATGGTCTCCAGATGCTAAGCATATTCAAGAATCATGAGGCCGA GACAACCATTGTGGAGGACTTCGACTTCTATGAGCAACGGGAGGAAGCCTTGAAGGAAAA TAGACGTCAGCAGCAGCCTGGCAGCGCAGAGTCCCTGAAGCCAACAGATGCTAAGGCTGT AGGAAGTTCTGTTACTCATATCGTGGATTCATTTTCTCGAAGCGTCCAGCTGAAAGAGAT CGAGAAAAGTGATAAGAGAACTGATGGTGCCATCTCAGTGAATGGTTCACAGACAGCTAC CGTCAAGGCCGAAAAAAGCACTGCAAACAAAACTACAGGTTCTGTGGAGGAGAGCAGTTG ATTACCTCCTGCCATTTACTAGTTTGGAGCAGCAGTTGGATCCATATGATTTGATGCTCG TCTGGAGTTGAGAAGGGAAAAAGCTGCCGATTCGGGTTTAGATTTGGGCTGCTGCTGCTT GCAGTTGTGAACATCATACTCCTTATTTCGCCTCCATTTAGGTTATAGTTTTTCAATATC ATAGTTTCAAAATTCTTGTTTGTGGATCCTTGCTTCTGTGTTCTTTCTTGTTTTCTTCTC TCTTTGTTTTACTTGCGTTGTGTCGTGAATGCTGTTCAGTTTTAGTGGCCTTCTCATCAC TTTTGGTTTACCGTCTGTCATAAATGCTGCCCAGTTGTGTTGTGAATGATGTTCTCTTTT ACTACTCCCTCCGTC
Protein Sequence (408 aa)
>BART1_0-u53291.011 408 150831_barley_pseudomolecules MALSGGDSSGFVDCTILLQSEIVVDNNPSKSTNTKEQIISITAEKTSASDARGSTSLKSP KGAQEKANFLGKGGEQPYVYQPNVYAPQPQTVYSGGYINPSGQWEEYPYYVSMEGVHSAS PSIMLSPGYANNPQMMYGAYSPVSTVGEGQSYSPMHFPFSNPYYQPPASLSMGYSNSGTG MSQGDPMLQQEYFLPDGLLYSPTAVYRQPFGSYNRAATQPSNASGLFGQGNAPLAFGMQH GTMYNSGSYKAHQQASKYGGTTPNWGSAGRRFNNFDCNSSQQRGSMPFNIQNGALEFLNE QNRGPRAAKPKKQDRDNSLVDDKSEKTTLLIDSELYNRPDFATEYKDAIFFVIKSYTEDH VHRSIKYNVWASTASGNRKLDSAYRAAKQKEDHSRVFLFFSWSVLRCC