- Transcript BART1_0-u53291.010
- Transcript IDBART1_0-u53291.010
- Gene IDBART1_0-u53291
Barley RTD
Exon Structure of BART1_0-u53291.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367195109 | 367194790 | + |
| chr7H | 2 | 367196042 | 367195969 | + |
| chr7H | 3 | 367196298 | 367196124 | + |
| chr7H | 4 | 367196746 | 367196670 | + |
| chr7H | 5 | 367197114 | 367196832 | + |
| chr7H | 6 | 367197307 | 367197240 | + |
| chr7H | 7 | 367197953 | 367197465 | + |
| chr7H | 8 | 367198300 | 367198150 | + |
| chr7H | 9 | 367199102 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.45505 | 9.53216 | 7.50622 |
| morex | ETI | 0.00050001 | 1.31093 | 9.5367 |
| morex | LEA | 0.201803 | 0.00113018 | 0.90677 |
| morex | EPI | 5.64956 | 2.24408 | 3.23087 |
| morex | ROO | 5.90707 | 6.46805 | 0.0000000341092 |
| morex | ROO2 | 6.34663 | 6.40415 | 4.90887 |
| morex | NOD | 2.37237 | 6.7335 | 5.91516 |
| morex | RAC | 2.94327 | 0.748358 | 2.08914 |
| morex | INF1 | 1.8406 | 1.93914 | 2.75583 |
| morex | INF2 | 0.00555671 | 6.07862 | 3.11481 |
| morex | CAR5 | 0 | 5.5289 | 0 |
| morex | CAR15 | 0.00000641543 | 0.893192 | 0.234809 |
| morex | LEM | 4.92476 | 4.30658 | 1.49187 |
| morex | LOD | 4.13229 | 3.95655 | 1.88779 |
| morex | PAL | 4.23079 | 4.20184 | 4.51007 |
| morex | SEN | 10.2891 | 1.78266 | 8.27247 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +2 | 0.0 | 603 | 296/383 (77%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+2 | 3e-88 | 181 | 140/379 (37%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.1.p | +2 | 0.0 | 690 | 334/401 (83%) | pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2363 bp)
>BART1_0-u53291.010 2363 150831_barley_pseudomolecules TAAAGTCCCAATTCGATGAAAGAAAAATCCGGACCGGGATTGTGCGCGTGGACAAAACGA GCCGGCACAGGTCCGGTTTTTAAAGCCCGCGATGATTAGCGTGGCCGGACCTCTTCCTCT TCGTCTCGCATACTCACCAGCGTCAAACCCGACGGTGGAAGGAAGCCCCTCCTCGCCGAC CATCGACGGCCTCCGTGTCTCCTCCAGCCGGAGAACGTAGCTACGCTAGCCCCTCTTTCC TCTCCTGTTTCGTCCCCCTCCTCCTCGTCCCATCTGCTGGAACATGGCGTTGAGCGGAGG AGATTCGTCCGGATTCGTCGATTGCACAATTCTGCTGCAATCAGAAATTGTAGTTGATAA TAACCCCTCCAAGAGTACAAATACCAAAGAGCAGATTATTTCTATTACGGCTGAGAAAAC AAGTGCTTCTGATGCGCGGGGCTCTACCTCCTTAAAGTCACCAAAAGGTGCACAAGAGAA GGCTAATTTTTTGGGAAAAGGTGGAGAACAGCCTTATGTCTACCAGCCCAATGTGTATGC TCCACAGCCACAGACAGTCTATTCTGGAGGATATATCAACCCTTCAGGGCAATGGGAAGA GTATCCCTATTATGTGAGTATGGAAGGAGTCCATTCTGCGTCACCTTCAATCATGCTATC TCCTGGGTATGCGAACAACCCCCAAATGATGTATGGAGCTTATTCTCCTGTTTCAACTGT TGGAGAGGGTCAGTCCTACTCCCCTATGCACTTCCCCTTCTCAAATCCGTACTACCAGCC ACCGGCTTCTCTTAGTATGGGATATTCAAATTCTGGTACTGGAATGTCTCAAGGAGACCC TATGCTTCAGCAAGAGTACTTCCTTCCTGATGGTCTTCTCTATTCACCCACAGCAGTGTA CCGCCAACCATTTGGGTCATACAACAGAGCGGCAACACAACCAAGCAATGCTTCGGGACT ATTTGGGCAAGGGAATGCACCATTGGCTTTTGGAATGCAGCATGGAACAATGTATAATTC TGGATCCTACAAGGCACACCAACAAGCTAGTAAATATGGAGGCACTACTCCTAATTGGGG TTCTGCCGGTCGTAGATTTAATAATTTTGACTGCAACTCCAGTCAACAAAGGGGGAGCAT GCCATTCAATATCCAGAATGGTGCTCTGGAGTTTCTGAACGAGCAAAACCGCGGCCCACG TGCTGCAAAACCAAAGAAACAAGACAGAGACAATTCTTTAGTAGATGACAAAAGCGAGAA AACCACTCTGCTTATTGACAGTGAACTGTACAATCGTCCTGATTTTGCCACGGAGTACAA GGATGCGATTTTTTTTGTAATTAAATCATACACAGAGGACCATGTACATAGGAGCATTAA GTACAATGTCTGGGCCAGCACAGCTAGTGGGAATAGAAAGCTGGATTCAGCTTATCGTGC GGCCAAACAGAAAGAAGACCATTCCCGTGTTTTCTTGTTCTTCTCGGAGCGTTGATTATT GGCAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGAAGTGGCACATTATTAAGGATGTCC CAAACACCCTACTCCGGCACATCACTCTTGAGAACAATGACAACAAACCTGTAACAAATA GCAGGGACACTCAGGAGGTCAAGCTAGAGTATGGTCTCCAGATGCTAAGCATATTCAAGA ATCATGAGGCCGAGACAACCATTGTGGAGGACTTCGACTTCTATGAGCAACGGGAGGAAG CCTTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCAGCGCAGAGTCCCTGAAGCCAACAG ATGCTAAGGCTGTAGGAAGTTCTGTTACTCATATCGTGGATTCATTTTCTCGAAGCGTCC AGCTGAAAGAGATCGAGAAAAGTGATAAGAGAACTGATGGTGCCATCTCAGTGAATGGTT CACAGACAGCTACCGTCAAGGCCGAAAAAAGCACTGCAAACAAAACTACAGGTTCTGTGG AGGAGAGCAGTTGATTACCTCCTGCCATTTACTAGTTTGGAGCAGCAGTTGGATCCATAT GATTTGATGCTCGTCTGGAGTTGAGAAGGGAAAAAGCTGCCGATTCGGGTTTAGATTTGG GCTGCTGCTGCTTGCAGTTGTGAACATCATACTCCTTATTTCGCCTCCATTTAGGTTATA GTTTTTCAATATCATAGTTTCAAAATTCTTGTTTGTGGATCCTTGCTTCTGTGTTCTTTC TTGTTTTCTTCTCTCTTTGTTTTACTTGCGTTGTGTCGTGAATGCTGTTCAGTTTTAGTG GCCTTCTCATCACTTTTGGTTTACCGTCTGTCATAAATGCTGCCCAGTTGTGTTGTGAAT GATGTTCTCTTTTACTACTCCCT
Protein Sequence (403 aa)
>BART1_0-u53291.010 403 150831_barley_pseudomolecules MALSGGDSSGFVDCTILLQSEIVVDNNPSKSTNTKEQIISITAEKTSASDARGSTSLKSP KGAQEKANFLGKGGEQPYVYQPNVYAPQPQTVYSGGYINPSGQWEEYPYYVSMEGVHSAS PSIMLSPGYANNPQMMYGAYSPVSTVGEGQSYSPMHFPFSNPYYQPPASLSMGYSNSGTG MSQGDPMLQQEYFLPDGLLYSPTAVYRQPFGSYNRAATQPSNASGLFGQGNAPLAFGMQH GTMYNSGSYKAHQQASKYGGTTPNWGSAGRRFNNFDCNSSQQRGSMPFNIQNGALEFLNE QNRGPRAAKPKKQDRDNSLVDDKSEKTTLLIDSELYNRPDFATEYKDAIFFVIKSYTEDH VHRSIKYNVWASTASGNRKLDSAYRAAKQKEDHSRVFLFFSER