- Transcript BART1_0-u53291.008
- Transcript IDBART1_0-u53291.008
- Gene IDBART1_0-u53291
Barley RTD
Exon Structure of BART1_0-u53291.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367195109 | 367194764 | + |
| chr7H | 2 | 367196042 | 367195969 | + |
| chr7H | 3 | 367196298 | 367196124 | + |
| chr7H | 4 | 367196746 | 367196670 | + |
| chr7H | 5 | 367196913 | 367196832 | + |
| chr7H | 6 | 367197114 | 367197019 | + |
| chr7H | 7 | 367197953 | 367197240 | + |
| chr7H | 8 | 367198300 | 367198150 | + |
| chr7H | 9 | 367199066 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.173556 | 0 |
| morex | ETI | 5.84549 | 5.19524 | 4.12626 |
| morex | LEA | 0 | 0.375396 | 0.73719 |
| morex | EPI | 4.2359 | 3.51442 | 2.94035 |
| morex | ROO | 0 | 0.36325 | 0.270649 |
| morex | ROO2 | 0.889258 | 1.58658 | 1.93393 |
| morex | NOD | 0 | 1.36132 | 1.41626 |
| morex | RAC | 3.37019 | 2.4527 | 1.3203 |
| morex | INF1 | 1.52325 | 1.36414 | 0.394226 |
| morex | INF2 | 1.43011 | 0.543952 | 1.56652 |
| morex | CAR5 | 1.37727 | 0 | 0 |
| morex | CAR15 | 0.225291 | 0.321714 | 0.446805 |
| morex | LEM | 2.82623 | 2.00653 | 1.9375 |
| morex | LOD | 2.20299 | 1.42337 | 1.97144 |
| morex | PAL | 1.22953 | 0.440581 | 1.116 |
| morex | SEN | 1.97761 | 3.05154 | 1.61147 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +2 | 5e-138 | 270 | 125/162 (77%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+3 | 3e-70 | 164 | 78/140 (56%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.1.p | +2 | 2e-153 | 285 | 133/163 (82%) | pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2405 bp)
>BART1_0-u53291.008 2405 150831_barley_pseudomolecules CCGGATGTTAGTTCGTTGATGATGAATAAAGTCCCAATTCGATGAAAGAAAAATCCGGAC CGGGATTGTGCGCGTGGACAAAACGAGCCGGCACAGGTCCGGTTTTTAAAGCCCGCGATG ATTAGCGTGGCCGGACCTCTTCCTCTTCGTCTCGCATACTCACCAGCGTCAAACCCGACG GTGGAAGGAAGCCCCTCCTCGCCGACCATCGACGGCCTCCGTGTCTCCTCCAGCCGGAGA ACGTAGCTACGCTAGCCCCTCTTTCCTCTCCTGTTTCGTCCCCCTCCTCCTCGTCCCATC TGCTGGAACATGGCGTTGAGCGGAGGAGATTCGTCCGGATTCGTCGATTGCACAATTCTG CTGCAATCAGAAATTGTAGTTGATAATAACCCCTCCAAGAGTACAAATACCAAAGAGCAG ATTATTTCTATTACGGCTGAGAAAACAAGTGCTTCTGATGCGCGGGGCTCTACCTCCTTA AAGTCACCAAAAGGTGCACAAGAGAAGGCTAATTTTTTGGGAAAAGGTGGAGAACAGCCT TATGTCTACCAGCCCAATGTGTATGCTCCACAGCCACAGACAGTCTATTCTGGAGGATAT ATCAACCCTTCAGGGCAATGGGAAGAGTATCCCTATTATGTGAGTATGGAAGGAGTCCAT TCTGCGTCACCTTCAATCATGCTATCTCCTGGGTATGCGAACAACCCCCAAATGATGTAT GGAGCTTATTCTCCTGTTTCAACTGTTGGAGAGGGAGACCCTATGCTTCAGCAAGAGTAC TTCCTTCCTGATGGTCTTCTCTATTCACCCACAGCAGTGTACCGCCAACCATTTGGGTCA TACAACAGAGCGGCAACACAACCAAGCAATGCTTCGGGACTATTTGGGCAAGGGAATGCA CCATTGGCTTTTGGAATGGTATGTTGTCATGCAATTTGGACTGTTTGCACAAGCTCCCCT GGACACGTTCAGTTCAGTAAAAATGGAGCACTTATTATTGGACCTCAAGTTTGGTTATTT GTTAAGCTTACTGCGCCCTGAAATGTCCAGTACTGAGTATGCATGTTATTTGCAGCAGCA TGGAACAATGTATAATTCTGGATCCTACAAGGCACACCAACAAGCTAGTAAATATGGAGG CACTACTCCTAATTGGGGTTCTGCCGGTCGTAGATTTAATAATTTTGACTGCAACTCCAG TCAACAAAGGGGGAGCATGCCATTCAATATCCAGAATGGTGCTCTGGAGTTTCTGAACGA GCAAAACCGCGGCCCACGTGCTGCAAAACCAAAGAAACAAGACAGAGACAATTCTTTAGT AGATGACAAAAGCGAGAAAACCACTCTGCTTATTGACAGTGAACTGTACAATCGTCCTGA TTTTGCCACGGAGTACAAGGATGCGATTTTTTTTGTAATTAAATCATACACAGAGGACCA TGTACATAGGAGCATTAAGTACAATGTCTGGGCCAGCACAGCTAGTGGGAATAGAAAGCT GGATTCAGCTTATCGTGCGGCCAAACAGAAAGAAGACCATTCCCGTGTTTTCTTGTTCTT CTCGGAGCGTTGATTATTGGCAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGAAGTGGC ACATTATTAAGGATGTCCCAAACACCCTACTCCGGCACATCACTCTTGAGAACAATGACA ACAAACCTGTAACAAATAGCAGGGACACTCAGGAGGTCAAGCTAGAGTATGGTCTCCAGA TGCTAAGCATATTCAAGAATCATGAGGCCGAGACAACCATTGTGGAGGACTTCGACTTCT ATGAGCAACGGGAGGAAGCCTTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCAGCGCAG AGTCCCTGAAGCCAACAGATGCTAAGGCTGTAGGAAGTTCTGTTACTCATATCGTGGATT CATTTTCTCGAAGCGTCCAGCTGAAAGAGATCGAGAAAAGTGATAAGAGAACTGATGGTG CCATCTCAGTGAATGGTTCACAGACAGCTACCGTCAAGGCCGAAAAAAGCACTGCAAACA AAACTACAGGTTCTGTGGAGGAGAGCAGTTGATTACCTCCTGCCATTTACTAGTTTGGAG CAGCAGTTGGATCCATATGATTTGATGCTCGTCTGGAGTTGAGAAGGGAAAAAGCTGCCG ATTCGGGTTTAGATTTGGGCTGCTGCTGCTTGCAGTTGTGAACATCATACTCCTTATTTC GCCTCCATTTAGGTTATAGTTTTTCAATATCATAGTTTCAAAATTCTTGTTTGTGGATCC TTGCTTCTGTGTTCTTTCTTGTTTTCTTCTCTCTTTGTTTTACTTGCGTTGTGTCGTGAA TGCTGTTCAGTTTTAGTGGCCTTCTCATCACTTTTGGTTTACCGTCTGTCATAAATGCTG CCCAG
Protein Sequence (243 aa)
>BART1_0-u53291.008 243 150831_barley_pseudomolecules MALSGGDSSGFVDCTILLQSEIVVDNNPSKSTNTKEQIISITAEKTSASDARGSTSLKSP KGAQEKANFLGKGGEQPYVYQPNVYAPQPQTVYSGGYINPSGQWEEYPYYVSMEGVHSAS PSIMLSPGYANNPQMMYGAYSPVSTVGEGDPMLQQEYFLPDGLLYSPTAVYRQPFGSYNR AATQPSNASGLFGQGNAPLAFGMVCCHAIWTVCTSSPGHVQFSKNGALIIGPQVWLFVKL TAP