- Transcript BART1_0-u53291.006
- Transcript IDBART1_0-u53291.006
- Gene IDBART1_0-u53291
Barley RTD
Exon Structure of BART1_0-u53291.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367195109 | 367194660 | + |
| chr7H | 2 | 367196042 | 367195969 | + |
| chr7H | 3 | 367196298 | 367196124 | + |
| chr7H | 4 | 367196746 | 367196670 | + |
| chr7H | 5 | 367196913 | 367196832 | + |
| chr7H | 6 | 367197114 | 367197019 | + |
| chr7H | 7 | 367197307 | 367197240 | + |
| chr7H | 8 | 367197953 | 367197468 | + |
| chr7H | 9 | 367198300 | 367198088 | + |
| chr7H | 10 | 367199112 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.29572 | 0.679807 | 2.19745 |
| morex | ETI | 0 | 1.6651 | 3.77539 |
| morex | LEA | 0 | 1.44143 | 0.680544 |
| morex | EPI | 0.0000001019 | 0 | 1.17128 |
| morex | ROO | 0.0000552938 | 2.50041 | 0.0000000106093 |
| morex | ROO2 | 1.39601 | 1.60713 | 0.0879365 |
| morex | NOD | 1.31021 | 0.600473 | 0 |
| morex | RAC | 0 | 0.000520446 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0.0137833 | 0 |
| morex | CAR5 | 6.6256 | 4.17889 | 2.32224 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0.0000000040749 | 0.00120102 |
| morex | LOD | 0 | 0.167748 | 0 |
| morex | PAL | 1.36199 | 1.01091 | 0.835645 |
| morex | SEN | 0.00338148 | 0 | 0.00572598 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +3 | 0.0 | 813 | 401/572 (70%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+3 | 1e-100 | 325 | 184/397 (46%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.2.p | +3 | 0.0 | 944 | 459/590 (78%) | pacid=32821514 transcript=Bradi3g18190.2 locus=Bradi3g18190 ID=Bradi3g18190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2457 bp)
>BART1_0-u53291.006 2457 150831_barley_pseudomolecules CCGACACACGTGTGTGCATGGCTTGCTTGTACGCTGAAGGGGACGGATAGCTGGCTTGAT CAAATCCCAGATTTTCTCATTAGCAGCCTACGGACAGACTGTAACCGGATGTTAGTTCGT TGATGATGAATAAAGTCCCAATTCGATGAAAGAAAAATCCGGACCGGGATTGTGCGCGTG GACAAAACGAGCCGGCACAGGTCCGGTTTTTAAAGCCCGCGATGATTAGCGTGGCCGGAC CTCTTCCTCTTCGTCTCGCATACTCACCAGCGTCAAACCCGACGGTGGAAGGAAGCCCCT CCTCGCCGACCATCGACGGCCTCCGTGTCTCCTCCAGCCGGAGAACGTAGCTACGCTAGC CCCTCTTTCCTCTCCTGTTTCGTCCCCCTCCTCCTCGTCCCATCTGCTGGAACATGGCGT TGAGCGGAGGAGATTCGTCCGGATTCGTCGATTGCACAATTCTGCTGCAATCAGAAATTG TAGTTGATAATAACCCCTCCAAGAGTACAAATACCAAAGAGCAGATTATTTCTATTACGG CTGAGAAAACAAGTGCTTCTGATGCGCGGGGCTCTACCTCCTTAAAGTCACCAAAAGGTG CACAAGAGAAGGCTAATTTTTTGGGAAAAGGTGGAGAACAGCCTTATGTCTACCAGCCCA ATGTGTATGCTCCACAGCCACAGACAGTCTATTCTGGAGGATATATCAACCCTTCAGGGC AATGGGAAGAGTATCCCTATTATGTGAGTATGGAAGGAGTCCATTCTGCGTCACCTTCAA TCATGCTATCTCCTGGGTATGCGAACAACCCCCAAATGATGTATGGAGCTTATTCTCCTG TTTCAACTGTTGGAGAGGGAGACCCTATGCTTCAGCAAGAGTACTTCCTTCCTGATGGTC TTCTCTATTCACCCACAGCAGTGTACCGCCAACCATTTGGGTCATACAACAGAGCGGCAA CACAACCAAGCAATGCTTCGGGACTATTTGGGCAAGGGAATGCACCATTGGCTTTTGGAA TGCATGGAACAATGTATAATTCTGGATCCTACAAGGCACACCAACAAGCTAGTAAATATG GAGGCACTACTCCTAATTGGGGTTCTGCCGGTCGTAGATTTAATAATTTTGACTGCAACT CCAGTCAACAAAGGGGGAGCATGCCATTCAATATCCAGAATGGTGCTCTGGAGTTTCTGA ACGAGCAAAACCGCGGCCCACGTGCTGCAAAACCAAAGAAACAAGACAGAGACAATTCTT TAGTAGATGACAAAAGCGAGAAAACCACTCTGCTTATTGACAGTGAACTGTACAATCGTC CTGATTTTGCCACGGAGTACAAGGATGCGATTTTTTTTGTAATTAAATCATACACAGAGG ACCATGTACATAGGAGCATTAAGTACAATGTCTGGGCCAGCACAGCTAGTGGGAATAGAA AGCTGGATTCAGCTTATCGTGCGGCCAAACAGAAAGAAGACCATTCCCGTGTTTTCTTGT TCTTCTCGGTTAATGGCAGTGGTCAGTTCTGCGGTGTTGCTGAGATGATTGGACCTGTTG ACTTCGACAGGAGCGTTGATTATTGGCAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGA AGTGGCACATTATTAAGGATGTCCCAAACACCCTACTCCGGCACATCACTCTTGAGAACA ATGACAACAAACCTGTAACAAATAGCAGGGACACTCAGGAGGTCAAGCTAGAGTATGGTC TCCAGATGCTAAGCATATTCAAGAATCATGAGGCCGAGACAACCATTGTGGAGGACTTCG ACTTCTATGAGCAACGGGAGGAAGCCTTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCA GCGCAGAGTCCCTGAAGCCAACAGATGCTAAGGCTGTAGGAAGTTCTGTTACTCATATCG TGGATTCATTTTCTCGAAGCGTCCAGCTGAAAGAGATCGAGAAAAGTGATAAGAGAACTG ATGGTGCCATCTCAGTGAATGGTTCACAGACAGCTACCGTCAAGGCCGAAAAAAGCACTG CAAACAAAACTACAGGTTCTGTGGAGGAGAGCAGTTGATTACCTCCTGCCATTTACTAGT TTGGAGCAGCAGTTGGATCCATATGATTTGATGCTCGTCTGGAGTTGAGAAGGGAAAAAG CTGCCGATTCGGGTTTAGATTTGGGCTGCTGCTGCTTGCAGTTGTGAACATCATACTCCT TATTTCGCCTCCATTTAGGTTATAGTTTTTCAATATCATAGTTTCAAAATTCTTGTTTGT GGATCCTTGCTTCTGTGTTCTTTCTTGTTTTCTTCTCTCTTTGTTTTACTTGCGTTGTGT CGTGAATGCTGTTCAGTTTTAGTGGCCTTCTCATCACTTTTGGTTTACCGTCTGTCATAA ATGCTGCCCAGTTGTGTTGTGAATGATGTTCTCTTTTACTACTCCCTCCGTCTNNNN
Protein Sequence (554 aa)
>BART1_0-u53291.006 554 150831_barley_pseudomolecules MALSGGDSSGFVDCTILLQSEIVVDNNPSKSTNTKEQIISITAEKTSASDARGSTSLKSP KGAQEKANFLGKGGEQPYVYQPNVYAPQPQTVYSGGYINPSGQWEEYPYYVSMEGVHSAS PSIMLSPGYANNPQMMYGAYSPVSTVGEGDPMLQQEYFLPDGLLYSPTAVYRQPFGSYNR AATQPSNASGLFGQGNAPLAFGMHGTMYNSGSYKAHQQASKYGGTTPNWGSAGRRFNNFD CNSSQQRGSMPFNIQNGALEFLNEQNRGPRAAKPKKQDRDNSLVDDKSEKTTLLIDSELY NRPDFATEYKDAIFFVIKSYTEDHVHRSIKYNVWASTASGNRKLDSAYRAAKQKEDHSRV FLFFSVNGSGQFCGVAEMIGPVDFDRSVDYWQQDKWSGQFPVKWHIIKDVPNTLLRHITL ENNDNKPVTNSRDTQEVKLEYGLQMLSIFKNHEAETTIVEDFDFYEQREEALKENRRQQQ PGSAESLKPTDAKAVGSSVTHIVDSFSRSVQLKEIEKSDKRTDGAISVNGSQTATVKAEK STANKTTGSVEESS