- Transcript BART1_0-u52598.018
- Transcript IDBART1_0-u52598.018
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.018
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244652889 | 244651658 | + |
| chr7H | 2 | 244654245 | 244653142 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.331083 | 0.40521 |
| morex | ETI | 0.556049 | 0 | 0 |
| morex | LEA | 0.15208 | 0 | 0.213117 |
| morex | EPI | 0 | 0.516695 | 0.137053 |
| morex | ROO | 0 | 0.450947 | 0 |
| morex | ROO2 | 0 | 0.248045 | 0.0896757 |
| morex | NOD | 0.483064 | 0.513162 | 0 |
| morex | RAC | 0.485596 | 0.208604 | 0.423761 |
| morex | INF1 | 0 | 0 | 0.173227 |
| morex | INF2 | 0.203843 | 0.134192 | 0.347484 |
| morex | CAR5 | 0.179188 | 0.249192 | 0.166448 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0.0848984 | 0.100816 |
| morex | LOD | 0.293024 | 0.106636 | 0.0977057 |
| morex | PAL | 0.805047 | 0.785242 | 1.50909 |
| morex | SEN | 0 | 0 | 0.212981 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +1 | 3e-148 | 392 | 227/404 (56%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT4G38950 @ ARAPORT AT4G38950.2 @ TAIR |
+3 | 5e-35 | 88 | 44/96 (46%) | Symbols: | ATP binding microtubule motor family protein | chr4:18154606-18158461 REVERSE LENGTH=836 |
| BRACH PP3 | Bradi3g42190.2.p | +1 | 0.0 | 540 | 276/405 (68%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2336 bp)
>BART1_0-u52598.018 2336 150831_barley_pseudomolecules CTTTGATAGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAA GCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTT GATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATG GATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAAC TATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCT GAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGA AGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAA GTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGC ATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCC GAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGAC TTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGC AAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGT GCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTT GATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGA AGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAAC ACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGAC ACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATG AGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATG AGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGT ATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGAC CAACCCGAGGAACATGAGGCAGAGGTAATGATCAGCAGACTGTTAGAGATGAGTGTACAG CAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTT CGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACT GCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAG ATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCA CCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGGTGAGTAAATATGTCAT GTTTTAGGGTATCCAGATCAACAGTATGTTCTTCTTTTTTGCAGGGTAACAGTATGTCCA TGAATTAAAATCTAAGTATGTTTTGATGGAATAATACTGACGCTGGTTTTTGCCCTCAGC TTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCC AACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGG CGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGC GCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATG TTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTA GGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGA GGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTG TCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGT GATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACC TTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCG TGGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACTTTGCATGGGCCGGCC
Protein Sequence (370 aa)
>BART1_0-u52598.018 370 150831_barley_pseudomolecules MDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHR RSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQ AEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKD SALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNN NTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKD MSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEVMISRLLEMSV QQLKLSKMLA