Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G057140	94.9	+	+	6324	-343	Containing

Transcripts from Gene BART1_0-u52598

Transcript	Length(bp)	Description
BART1_0-u52598.001	4117	4117 bp MSTRG.52598.1 MSTRG.52598
BART1_0-u52598.002	4114	4114 bp MSTRG.52598.2 MSTRG.52598
BART1_0-u52598.003	3907	3907 bp MSTRG.52598.3 MSTRG.52598
BART1_0-u52598.004	4221	4221 bp MSTRG.52598.4 MSTRG.52598
BART1_0-u52598.005	4776	4776 bp MSTRG.52598.5 MSTRG.52598
BART1_0-u52598.006	4217	4217 bp MSTRG.52598.6 MSTRG.52598
BART1_0-u52598.007	3761	3761 bp MSTRG.52598.7 MSTRG.52598
BART1_0-u52598.008	3602	3602 bp MSTRG.52598.8 MSTRG.52598
BART1_0-u52598.009	3524	3524 bp MSTRG.52598.9 MSTRG.52598
BART1_0-u52598.010	3990	3990 bp MSTRG.52598.10 MSTRG.52598
BART1_0-u52598.011	4304	4304 bp MSTRG.52598.11 MSTRG.52598
BART1_0-u52598.012	3439	3439 bp MSTRG.52598.12 MSTRG.52598
BART1_0-u52598.013	4116	4116 bp MSTRG.52598.13 MSTRG.52598
BART1_0-u52598.014	3938	3938 bp MSTRG.52598.14 MSTRG.52598
BART1_0-u52598.015	3516	3516 bp MSTRG.52598.15 MSTRG.52598
BART1_0-u52598.016	3173	3173 bp MSTRG.52598.16 MSTRG.52598
BART1_0-u52598.017	3246	3246 bp MSTRG.52598.17 MSTRG.52598
BART1_0-u52598.018	2336	2336 bp MSTRG.52598.18 MSTRG.52598

Exon Structure of BART1_0-u52598

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g43400.4	+3	0.0	719	377/608 (62%)	protein|kinesin motor domain containing protein, expressed
TAIR PP10	AT3G51150 @ ARAPORT AT3G51150.1 @ TAIR	+1	1e-89	280	130/174 (75%)	Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1052
BRACH PP3	Bradi3g42190.2.p	+3	0.0	821	418/602 (69%)	pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons