- Transcript BART1_0-u52598.017
- Transcript IDBART1_0-u52598.017
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.017
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244652881 | 244650663 | + |
| chr7H | 2 | 244653452 | 244653148 | + |
| chr7H | 3 | 244654310 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.14659 | 0.163044 | 0 |
| morex | ETI | 0.569084 | 0 | 0.0102126 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0.87901 | 0.0000000535494 | 0.177668 |
| morex | ROO | 0 | 0.0351598 | 0 |
| morex | ROO2 | 0.000304545 | 0.000000768213 | 0 |
| morex | NOD | 0.190186 | 0.73654 | 0.740476 |
| morex | RAC | 0.376208 | 0.366899 | 0.259187 |
| morex | INF1 | 0.232334 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0.145724 | 0.302108 | 0.396884 |
| morex | PAL | 0.354613 | 0.000225465 | 0.689249 |
| morex | SEN | 0 | 0.0678183 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.3 | +3 | 0.0 | 716 | 376/607 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.2 @ TAIR |
+3 | 2e-48 | 187 | 91/192 (47%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1054 |
| BRACH PP3 | Bradi3g42190.2.p | +3 | 0.0 | 814 | 417/602 (69%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3246 bp)
>BART1_0-u52598.017 3246 150831_barley_pseudomolecules AGAAGACAAAGGGTAATATATTAACATGAAAATGATATCAATCACACCTTAGTCTGAACT ACTATGTTCCTCTTGCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCT GACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAAT GAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGC AAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAA GCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTC CTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGGTACTTTT CCTCAATTGAAATTTTCCAACCCTTGTAACAGTGTTAATTGCAGGACTGCACAATTTCAT CCACCATGTACCTGTCTATTCTTTTTTCAGCTGGAAAAACAGCTTAGGGAATTGATAGAA GAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACCAT GACAATGATCGTGCTGCAAAGCGATGGGTACTATCTCTCTCAGGCTACTCATAGTGGGGG TATCATAGAGTACTATCATGCATATAGTATCATGCAAAAGTGATAGTACTATTGTATGAT ACTACCTCCATAATGCATAGTATCATAAACTAGTATCATAGATGATCTCATTTATTGACA TGCATGACACATAGTAGCATAGCATTTAACATGATACGATATCTACCTATGTTACTCTAA CCTTCTCTCTCTTCTTTAATTGTCTGTCACATCAGCATGTTTGCTAGTCCCAAGTACATG ATACTACCTAAGTTACTCTCATTATGACCAGCCTCATACACACGGACTTAATTTTTTACA TTATTATAATGTGTGACATTTAATGATCTGTTGTCCTTTGATAGGATGTCCATAGTCGGT CCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATG GAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTG ATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTC GGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCAT ATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGG AAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTAT TACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAG TCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATA TGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAG ATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGT ACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTA CTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCA GGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGA CACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTC TGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATT CTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGG ACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGG CCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGG AGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAG AGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGA CTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCC CGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGA TCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCC TCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCT TCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGT CCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGC TCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAAC AGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGG AGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGG AGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGC TACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTAC AAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGC ATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCG TGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCC CTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCC ATGCGTGGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACTTTGCATGGGCCGGC CTAGTTTTGCCTGGTTTTGTAAACCTTTTAGGAGGCTCTTTGACACGTTTTTTCATTTTG TACAGG
Protein Sequence (553 aa)
>BART1_0-u52598.017 553 150831_barley_pseudomolecules MDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHR RSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQ AEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKD SALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNN NTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKD MSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAETVRDECTAVKT VKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKGDAADSVY MEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANGDKEGIYT RWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFSLNFTLAP RTERRSFSLLLGA