- Transcript BART1_0-u52598.016
- Transcript IDBART1_0-u52598.016
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244649454 | 244649352 | + |
| chr7H | 2 | 244649654 | 244649541 | + |
| chr7H | 3 | 244649826 | 244649745 | + |
| chr7H | 4 | 244649975 | 244649908 | + |
| chr7H | 5 | 244650141 | 244650076 | + |
| chr7H | 6 | 244650328 | 244650221 | + |
| chr7H | 7 | 244651074 | 244650741 | + |
| chr7H | 8 | 244651289 | 244651173 | + |
| chr7H | 9 | 244652881 | 244651667 | + |
| chr7H | 10 | 244653452 | 244653142 | + |
| chr7H | 11 | 244654243 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.80571 | 0 | 0 |
| morex | ETI | 2.83709 | 2.80006 | 3.52223 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 1.65155 | 1.23875 | 1.25375 |
| morex | ROO | 0.817084 | 0.00000000932423 | 0 |
| morex | ROO2 | 1.61982 | 2.14284 | 0.0374682 |
| morex | NOD | 0 | 5.12825 | 2.2716 |
| morex | RAC | 6.2274 | 5.30462 | 3.87514 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 12.1594 | 5.7186 | 9.24506 |
| morex | LOD | 3.43186 | 8.166 | 4.6107 |
| morex | PAL | 15.2385 | 12.0066 | 7.96978 |
| morex | SEN | 0.397768 | 0.00956162 | 0.268242 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 986 | 506/760 (67%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+3 | 2e-167 | 327 | 272/826 (33%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.1.p | +3 | 0.0 | 1093 | 554/754 (73%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3173 bp)
>BART1_0-u52598.016 3173 150831_barley_pseudomolecules AGCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAAT TACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAATT CATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCA TGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCT TACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGC TCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACT CAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCT GGTGTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTC AGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAA GCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATTACAGT CCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACACACTC ATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACAA ATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAGAGAGC TCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCTG AAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTGA TAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACG ACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAGTCGGTCCTCAGAGTCTC TTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATC AAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCT TGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTT CACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGG AGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTA TAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGG GCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTG ATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATACG CTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAG TGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATT CTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGT GTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCA TGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGATG AAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAA ATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAG TTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCA GTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCA GTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCA GTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGA AGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGCAGACTGTTA GAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTA CCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCG AGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCA AGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCC TCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCT TGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCA ACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGC GGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCG CCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGT TCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAG GCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAG GTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGT CTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTG ATATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCT TGCGTCGTATGTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCGT GGGAGCATCGCACCATCCGGAATTTCCTATTTGCCCCACTTTGCATGGGCCGG
Protein Sequence (728 aa)
>BART1_0-u52598.016 728 150831_barley_pseudomolecules MSPAHTHIEQSRNTLLFATCAKEVVTNAQVNVVMSDKALLKHLQRELARLENELKLPESA SCTSHAEALREKDAQIKKLEKQLRELIEEKDTVQSQLNCLLRSDGDDHDNDRAAKRWDVH SRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGSYVFSADHDGLSSPNKPMDLPQQT RVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHRRSTSQEF NVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQAEIIANA VEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKDSALARSQ SCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNNNTSVDLS ADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKDMSTSDEV GKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQQTVRDECTAVKTVKDVG IDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKGDAADSVYMEVEH RRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANGDKEGIYTRWGID LGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFSLNFTLAPRTERR SFSLLLGA