- Transcript BART1_0-u52598.015
- Transcript IDBART1_0-u52598.015
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244648097 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650141 | 244650076 | + |
| chr7H | 9 | 244650345 | 244650221 | + |
| chr7H | 10 | 244651074 | 244650741 | + |
| chr7H | 11 | 244651289 | 244651173 | + |
| chr7H | 12 | 244652881 | 244651678 | + |
| chr7H | 13 | 244653452 | 244653145 | + |
| chr7H | 14 | 244654176 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.76425 | 0.00000000726834 | 0.0421301 |
| morex | ETI | 5.74197 | 4.14549 | 4.40531 |
| morex | LEA | 0.0242012 | 2.39277 | 3.35731 |
| morex | EPI | 1.82607 | 0.000000407429 | 2.26372 |
| morex | ROO | 0.952416 | 0.796855 | 0.970342 |
| morex | ROO2 | 2.11363 | 1.90516 | 3.4851 |
| morex | NOD | 5.8841 | 7.33814 | 2.0073 |
| morex | RAC | 12.7104 | 12.0065 | 16.1586 |
| morex | INF1 | 0 | 0 | 0.00000202484 |
| morex | INF2 | 0 | 3.87042 | 4.21997 |
| morex | CAR5 | 4.73764 | 1.70501 | 3.02816 |
| morex | CAR15 | 0.756817 | 0.593955 | 0.233078 |
| morex | LEM | 18.923 | 11.0642 | 14.3903 |
| morex | LOD | 7.8062 | 7.89256 | 8.18882 |
| morex | PAL | 16.0996 | 20.968 | 21.0627 |
| morex | SEN | 0.745954 | 0 | 0.419622 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.3 | +1 | 0.0 | 778 | 371/414 (90%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.1 @ TAIR |
+1 | 0.0 | 585 | 282/408 (69%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1052 |
| BRACH PP3 | Bradi3g42190.2.p | +2 | 0.0 | 815 | 415/598 (69%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3516 bp)
>BART1_0-u52598.015 3516 150831_barley_pseudomolecules AGCAGAAGAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCA TTGGTCGTCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGCTGAGAAGGGCGATGGGG GCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCAAGGAGGAGAGGATC ATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCGACAGCTCCGACTGG GAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCTGACCGCGCCATGTTC CCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTAC GAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTT GCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAATTACTGAGTACAGT GTGATGGACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAATTCATGCTGAAATTC TCAGCAATAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACCT CTTAGACTGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACA TTGAGGGACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGCTCAAAGAGAGATT GGAGAAACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACAATC GAAAGTTCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGTGTG AACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTATGAGG TTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCGCCAA CTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATTA CAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACAC ACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTT ACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAGA GAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCAT GCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAA TTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGT GACGACCATGACAATGATCGTGCTGCAAAGCGATGGTCGGTCCTCAGAGTCTCTTGCACG AAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCA AGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATC CCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTG GCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGC TTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGAT ACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAA GCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGT GCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAA AGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCA ATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACAT TTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAAC GAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCAT TCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTT CAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGA TTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGA TGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGA AGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGA AGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGC AGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGC AAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGTG TACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTC TCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCA CGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGC TGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTT CAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCT GAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAA GGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCT ATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGT GGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAA CTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATC TTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAA CAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTG TTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGT GTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTAT GTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTT
Protein Sequence (620 aa)
>BART1_0-u52598.015 620 150831_barley_pseudomolecules MVTTMTMIVLQSDGRSSESLARNASEEALSVSDTYGGSYQDQGHAVFDGSYVFSADHDGL SSPNKPMDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCI EIHEHRRSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYA SKEEQQAEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRC ITSSKDSALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGN DDCQNNNTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTS DEVVKDMSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAEQTVRD ECTAVKTVKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKG DAADSVYMEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANG DKEGIYTRWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFS LNFTLAPRTERRSFSLLLGA