- Transcript BART1_0-u52598.014
- Transcript IDBART1_0-u52598.014
- Gene IDBART1_0-u52598
Barley RTD
Exon Structure of BART1_0-u52598.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244648075 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649462 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649908 | + |
| chr7H | 8 | 244650141 | 244650076 | + |
| chr7H | 9 | 244650328 | 244650221 | + |
| chr7H | 10 | 244651074 | 244650741 | + |
| chr7H | 11 | 244652881 | 244651173 | + |
| chr7H | 12 | 244653452 | 244653148 | + |
| chr7H | 13 | 244654200 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.000126304 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.254513 | 0.492428 |
| morex | ROO2 | 0 | 0.000806394 | 0 |
| morex | NOD | 0 | 0.576942 | 0.0179556 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0.000013844 | 0.264193 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0.00000000105599 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.3 | +1 | 0.0 | 716 | 376/607 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.1 @ TAIR |
+1 | 2e-155 | 228 | 111/153 (73%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1052 |
| BRACH PP3 | Bradi3g42190.2.p | +1 | 0.0 | 814 | 417/602 (69%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3938 bp)
>BART1_0-u52598.014 3938 150831_barley_pseudomolecules CTTCTCGGCACCAACAAGGAGGAGCAGAAGAGGAGAGGGGGCGACACAGTCTTGCCACTA GCTGCATTTCTCTCCTCTCGCATTGGTCGTCTTCTAGTTCCACCGTCCACCAGGGTGCGC AGGGCTGAGAAGGGCGATGGGGGCGGGGGAGGAGGATGCGGCGGCGGCATGGGAGAAGGT GGAGGCCAAGGAGGAGAGGATCATGGTGTCCGTGCGGGTGCGGCCCCTGAACGGCAGGGA GTCCGGCGACAGCTCCGACTGGGAGTGCATTAGCCCCACCACCGTCATGTTCCGGAGTAC CGTTCCTGACCGCGCCATGTTCCCCACCGCCTACACCTATGACAGGGTGTTTGGCCCCAA TTGCTCTACCAGACAGGTCTACGAGGAAGGAGCAAAAGAAGTTGCTCTATCAGTTGTCAG TGGAATCAACTCAAGCATATTTGCGTATGGGCAAACAAGCAGCGGAAAGACTTACACAAT GACTGGAATTACTGAGTACAGTGTGATGGACATTTATGACTACATAGAGAAGGTGTGCGT CACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAATAGAGATATATAATGAAGCTGTG AGGGATCTTCTGAGCCATGATACGACACCTCTTAGACTGCTTGACGATCCTGAGAAAGGG ACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGGACAAGGACCATCTTAGGGATCTT CTTGGAATGTGTGAAGCTCAAAGAGAGATTGGAGAAACGGCTTTGAACGAAGCGAGTTCT AGGTCCCACCAAATACTCAGGCTGACAATCGAAAGTTCTGTTAAGCAGTATTTAGGAAGA AGCAAATCGAGCACCCTGGTGTCTTGTGTGAACTTTGTTGACCTAGCTGGAAGTGAGCGA GCATCTCAGACTGCTTCAGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGT CTGCTAACACTGGGAAAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCT GACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAAT GAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGC AAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAA GCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTC CTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAA ACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACT GAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGTACTATCTCT CTCAGGCTACTCATAGTGGGGGTATCATAGAGTACTATCATGCATATAGTATCATGCAAA AGTGATAGTACTATTGTATGATACTACCTCCATAATGCATAGTATCATAAACTAGTATCA TAGATGATCTCATTTATTGACATGCATGACACATAGTAGCATAGCATTTAACATGATACG ATATCTACCTATGTTACTCTAACCTTCTCTCTCTTCTTTAATTGTCTGTCACATCAGCAT GTTTGCTAGTCCCAAGTACATGATACTACCTAAGTTACTCTCATTATGACCAGCCTCATA CACACGGACTTAATTTTTTACATTATTATAATGTGTGACATTTAATGATCTGTTGTCCTT TGATAGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCA CTTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGAT GGATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGAT CTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTAT AGCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAG GTATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGC ACAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTA GAGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATA ACAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAG ATCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTT GCACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAA CCTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCA TTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGAT GATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGG CCTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACT TCAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACA GGTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGT ACCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGC ACCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATG GGTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAA CCCGAGGAACATGAGGCAGAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAA GATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGAT TTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTA CACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAA GTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGC GAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTC TACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGG GGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGG GCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTT GAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACC GAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGG GTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGC GTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTT GAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGAAT CAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGTTC GTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATCG
Protein Sequence (553 aa)
>BART1_0-u52598.014 553 150831_barley_pseudomolecules MDLPQQTRVRQPVSPWHPTSNYSSDGAESYNIKEVAFRTASEVSEEHCREVQCIEIHEHR RSTSQEFNVLLHEGTKLHIPEVEDISRDAVPQPDEVLEAGSITEKMEDHMKIYASKEEQQ AEIIANAVEDPIEVHQCESDDFAHNFVKLYPCDSNISLDVGKPYPHECLTVKRCITSSKD SALARSQSCRASFMIIPNSWFDDSENTRQTPPDEIFRYPPRRPDKVRRSLYQGNDDCQNN NTSVDLSADSGEVVCDEVVKDTGTSDAVKDMSTSAEVVKDMSTNDEVVKAMSTSDEVVKD MSTSDEVGKESSTSEAEQEVCMGDISCVTELEQKTAKHHEDQPEEHEAETVRDECTAVKT VKDVGIDAVPSTAESPSCWPIDFANRQREIIELWHDCNVSLVHRTYFFLLFKGDAADSVY MEVEHRRLSFILSSFSTNSAGGELNSAIASSLKNLKRERDMFYKQMLKKLANGDKEGIYT RWGIDLGSKQRRLQLSRLVWTRADMEHVRESASLVARLIDLVEPGQALKEMFSLNFTLAP RTERRSFSLLLGA